Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3153 ATGTCGTCTTCGGAGACCATCAATATCGCTGCAAGTACGCAGAAACTCGATGTTGACAATCGACTTGCTCTGCGATTCTACTATAGAATCGCCGATAATATCCTCAAACAGGCTGATATCTTTCGTGCAGAGAACAATATCGTCGATCTATATGTCATGCTCCTAAGATTTTCTAGTTTGGTCTCTGAGACGATACCACGTCACCGAGATTATAGATCATCTCCACAAATCAAGAAAGAAATTTTGAGAAAGAAATTGTTAAATTCTTTGAATGAGCTGGAGAAATTGAAACCAAAGGTGCAACAGAAGATCAATGAGTTTAATAACAGCAGGCGAGCATACCATCATCAGAATGGGCTGAAAAATTGTTATTCAAATAATTTGATGGTTTCTCCAGTGAAAAAGCAATCTTTGGCTAGTTATGATCGAACAAAGGCAATCGTGCCAACTACAGGAGAGTTTGTTTACCAAGGATCAAGGGGCCAGCAGTTTTCTAGTGTAAGGCCTGTAGAAGAAAATATGAGAAGACTATCTCTAAATCTCCTACGTCCAAAGGAGGAAACTCTCTCCAGACATTCTATTTTAGGTCCCAATGGCCTGAAAGGGCAGTGGCGACCACCTGCAAGTGATCAAGGGGTCAGGTATCCAACCATCATAGATTTGTCTCCAGTTGAAATTCCAAGCCTTCAACAACCCTTGGAAGATGGATCTCTGAGTGAAAAAGATAATACCGTTTCAGAACAACAAAGATCAGATGTAGAGTCATTTCTTACCCCGAGTGACAACATCCAGGAAAAGCTTGCTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAATCCCTACTCAAATAGAAGTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAGGATTTGATTCCAGCAGTGTCACCTCATGTTATTGAGGAAGGATGTATAAAAGAAATTCCATCATCAGATAGTATTGTTCGTGCCGAGTCTCCTCTGCAACTACACATTTCAACTTCTATGATGAAGAGTTTTATGAAGCTTGCCAAATCGAATACTGACAAAAATTTAGAGACTTGTGGCATTCTTGCAGGTTTGCTTAAAAACAGGAAATTTTATATTACAGCTCTAATAATTCCAAAGCAGGAGGCAACATCTAGTTCTTGCCAAGCTACAAATGAAGAGGAGATATTTGAAGTACAGGATAAGCAATCTCTTTTTCCCCTAGGATGGATCCACACACATCCCACACAATCTTGTTTCATGTCATCAATTGATGTACATACCCATTACTCGTATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTCATGGCACCAACAGACAGTTCAAGAAGCCATGGCATTTTTCGGTTGACAACCCCAGGTGGAATGTCGGTCATAAGACAATGCCAGCAACGTGGCTTTCATTCACACAATCAGCCTCCTGATGGTGGTCCCATTTACGATACTTGCACAGATGTTTACATGAACCCAGATTTAAAATTTGATGTCATTGATCTTCGATGA 1533 0.4057 MSSSETINIAASTQKLDVDNRLALRFYYRIADNILKQADIFRAENNIVDLYVMLLRFSSLVSETIPRHRDYRSSPQIKKEILRKKLLNSLNELEKLKPKVQQKINEFNNSRRAYHHQNGLKNCYSNNLMVSPVKKQSLASYDRTKAIVPTTGEFVYQGSRGQQFSSVRPVEENMRRLSLNLLRPKEETLSRHSILGPNGLKGQWRPPASDQGVRYPTIIDLSPVEIPSLQQPLEDGSLSEKDNTVSEQQRSDVESFLTPSDNIQEKLADEAPSLISFEATEIPTQIEVIRQPSPPPVLAEVQDLIPAVSPHVIEEGCIKEIPSSDSIVRAESPLQLHISTSMMKSFMKLAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQEATSSSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPTDSSRSHGIFRLTTPGGMSVIRQCQQRGFHSHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3153 510 MobiDBLite consensus disorder prediction 233 254 - -
Vra7g3153 510 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 333 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vra7g3153 510 Gene3D Cytidine Deaminase, domain 2 322 510 - -
Vra7g3153 510 Coils Coil 506 510 - -
Vra7g3153 510 MobiDBLite consensus disorder prediction 190 211 - -
Vra7g3153 510 SUPERFAMILY USP8 N-terminal domain-like 22 110 - -
Vra7g3153 510 Coils Coil 83 110 - -
Vra7g3153 510 PANTHER AMSH-LIKE PROTEASE 2 510 - -
Vra7g3153 510 Pfam USP8 dimerisation domain 8 103 IPR015063 -
Vra7g3153 510 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 2 510 - -
Vra7g3153 510 Gene3D - 2 122 - -
Vra7g3153 510 SUPERFAMILY JAB1/MPN domain 335 466 - -
Vra7g3153 510 SMART pad1_6 335 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vra7g3153 510 CDD MPN_AMSH_like 335 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vra7g3153 510 ProSiteProfiles MPN domain profile. 336 464 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3153 Vra-Chr7 51278869 51285496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3153 K11866 - gmx:100800636 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3153 7 51278869 51285496 Vra7g3153 7 51278869 51285496 ECH