Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3140 ATGAATTTCCCTTCAGAAGCTACAGAATTGGGCAGCCCCATTGGTAGTTCCTTTGAAAATGGGAGTTTTCAATCCCACAATGTTGAGTTGGAAGCCAAGAATCGATTGCTTTTGGTTCAGTGGTTAACTAGCCTTATTCCTTCATTGAAATTTCCACCAAATGTCACGGATGGTGAATTAAGAGCATGCTTGAGTAATGGTACTGTTTTGTGCCAGATACTGAACAAGCTACGACCTGGTATTGTGAATGTGGTTAGTGAACCTGATAATGTTCTGCCATCACAATCAGAAAATGTTAAATCGTTTCTGAAAGTTTTGGATCTAACGGGAATGCTCCGGTTTGAAATATCAGACCTAGAAAAGGGGTCTATGAAAGCTGTTGTGGAATGTCTTTTAACACTCAGAAAAAAAAGTTTGCAGCATGCTTTTGGAGATAATCTTCCTAGTTCCATCACAGTCAGCCCTCGTGTGAATTCACCATTCCATCATCATCATTGTTCTACAACATTTGGTGGAGAGCAGAAGAAGTTTTCAACTTCGTCAAAGTTGCAGCGTGTTATGAGTTCCCCATCTGTGCAGGGTTCGTTTTACTCATTTGTATATTCGACAGAGCAATCAGCCTCATTAATACACCATGCTGGTCATAATTTCCATGAGGTGTTTCAACTGAAACCAGGAAGTTACATAGATCTTCCACCTGAAAAGATATCAGAAATGATGAAATCAAACAATATAGATAATGCTCCCACTCAGTCGCTTCTGAGTGTTGTGAACGGTATTCTTGAAGAAAGTGTTGAAAGAAGAAATGGGGAAATACCTCATCGTGTGGCTTGCTTATTGAGGAAGGTTGCGCAAGAGATTGAACGGCGCATGTCAACTCAAGCAGAACATTTACGAACTCAAAACAATCTTTTCAAGGCTCGAGAAGAAAAATACCAGTCCAGAATAAGAGTACTCGAGACACTTGCATCAGAAACTAAAGATGAGAATGAGCGTGAGAGGATCAAAGAGGAAGAAAATAAGGTTGATGAGACAGAAGTTGGTAGGTTGATAAAAGAGCAGCAGGACAAAATATTGGAAATTTCAGCTTTGAAGATAGAACTGGAAACGGCCAAAAGAACATCTATAGTGCAATTGGCACAGTTGGAAGCAGAAGCTGAGGGTGCTAAAGCAGAACTGACACATATGGCTCAAGAATATAAACAACAAATAGAAGAAGTAAGAAATAAGGCTGAAAATATGAAAGATGAATTAGTTAGGTTGATGAAAGAACAGGAGGACAAAAAAATGGAAATTTCAGCTTTGAAGAGCGAACTGGGAACAGCCAAAAGAACATATGAAGCACAATTCTCTCAACTTGAAGAAGAAGCAAAAGGTGCTAAGGCATGGACAGAAAAGGCCCAAGAATATGAGTACCAATTGAAAGTATTACAAAATAAGGTTGAAAAGTTTCAAGAAGAGGTTAAGACAGCGAATGATGAGGAAATTGCTAGGTCAATGAAAGAACAGGAGCACAAAAGTTCAGAAATTTCAGCTTTGAAGCAAGAACTCGAAACAACTAAAACAGCATATGAAGTACAGCGGTCCCAGTTGGAAAAGTATGCCAAAGCAGAATTGGAACAAAAGTGTGAAGAATATGAGCATCAATTGAAAGAGTTAAGAAATACGGTTAAGGAACTTGAGGTTTCTTCGGATTCAAAAGATCAGAAGTGGAACATGAAAATGAACCGATTTCTGACTGTCATAACATTTCAATTCAGTTCCCTACAGAAAATGAAGTTATCTTTGGAATCCACTAAGCAAAATGTAATAAAAGAGCAAACGGTTTATGCAGGGGAGTTGGATCTATTAGGTGTAAAACTTAAACCACTTTTACACGCAGCTGAGAACTACCACGTTGTTATGGCTGAAAATAAAAAACTGTTCAATGAGATTCAAGAACTAAAAGGAAATATCAGAGTATATTGTCGAATTCGACCATCTGCATTAGGAAAATTGGAAAAAGAGTCTATTGTTGAACACGTTGGTGAAAATGATTTGGTTGTGGCAAATCCATCCAAAGAAGGAAAAGATACTCTTCGGTCATTTAAATTTAACAGGGTTTTCAGCCCTGCCGCAACTCAAGCGGAGGTATACTCCGACATCCAAGACTTCACTAGATCAGTTCTAGATGGGTATAACGTGTGTATATTTGCTTATGGTCAAACTGGTTCAGGGAAGACTTATACAATGACTGGTCCAAATGGGGCAACAAGCGAGACTATCGGTGTTAACTATCGAGCTCTAAATGACCTCTTCAGGATTTCCACAAGTAGACAAGATATAGTGGAGTATGAGATCGGAGTTCAAATGGTTGAGATATATAACGAGCAAGTACGTGACTTGTTAACAACATATGCTTCTCCAAAAAGAACACTTGGGATATTGACTCAATCTCGACCAAATGGCTTAGTAGTCCCAGATGCTAGCTTGTTCCCAGTGAAATTACCTTCAGATGTTATTAAGCTAATGGAAATTGGACTTAAAAATAGAGCCATTGCTGCAACTGCTATGAATGAACGAAGTAGCCGTTCTCACAGTGTTGTCTCAGTTCACGTTACCGGGAAGGACTTGAAGACTGGTTGCACTATGGCTGGTAATCTTCATTTGGTAGATTTGGCTGGAAGTGAAAGAGTAGATCGTTCTGAAGTAATTGGGGATAGGCTCAAAGAAGCACAGCATATAAATAAATCACTAGCTGCCCTTGGAGATGTAATTTTTTCCCTTTCTCAAAAGAGCTCTCATGTACCATACAGAAACAGCAAGCTTACTCAACTTCTACAAACTTCTCTTGGTGGTCAAGCAAAGACGCTCATGTTCGTCCAAATCAATTCAGACTTAAGTTCATATTCTGAAACTCTAAGCACTTTAAAGTTTGCTGAGAGGGTTTCTGGAGTTGAATTAGGAGCTGCGCGAAGTAACAAAGAGGGCAAAGACTTTAAAGAAATGATGGAACAGGTGTCTTCTTTGAAGAGCTCTATTTTGGCAAAAGATGAGGAGATTGAGAGACTTCAAGCCATGAAAGGTTTAGCTGGTAGCAGAGTTAAGCGAAATATAATTCCACGAAGTAGAAGTAGTATCCAGTTACAATCTACTAGTCCCCAACCAATCGATGATCATGCGCAACAAAATGATTTTGTTGCAACTGCAGAAACATGTACAGATTCTGATTTTGACGGAAGATCAAGTGATTTTTCTGACGGTGGTGTTGCTGCAGGCACAGAAACTGATGGTTCTGAAAATTCCAGTCTCACTGAAGTCCCAAAACCACCATCAGAGAAGATGTCTAAAGGATTTCGCAGAACTGTTCAAGCTATGAGGAAATTTGGCCGAACTTCATCAAACACAATTCCCACAATCCCCACCATCCCCACCGCTGCCCCAGTAAAGGAACCAGTGAAGAAGTCATCAGGTGTGTATATGCATACTACGTTAACACTCTTCTTAACATCTATTCTCATTCAACTTCTCAACTTTCTTTCACAAATTTGA 3531 0.3937 MNFPSEATELGSPIGSSFENGSFQSHNVELEAKNRLLLVQWLTSLIPSLKFPPNVTDGELRACLSNGTVLCQILNKLRPGIVNVVSEPDNVLPSQSENVKSFLKVLDLTGMLRFEISDLEKGSMKAVVECLLTLRKKSLQHAFGDNLPSSITVSPRVNSPFHHHHCSTTFGGEQKKFSTSSKLQRVMSSPSVQGSFYSFVYSTEQSASLIHHAGHNFHEVFQLKPGSYIDLPPEKISEMMKSNNIDNAPTQSLLSVVNGILEESVERRNGEIPHRVACLLRKVAQEIERRMSTQAEHLRTQNNLFKAREEKYQSRIRVLETLASETKDENERERIKEEENKVDETEVGRLIKEQQDKILEISALKIELETAKRTSIVQLAQLEAEAEGAKAELTHMAQEYKQQIEEVRNKAENMKDELVRLMKEQEDKKMEISALKSELGTAKRTYEAQFSQLEEEAKGAKAWTEKAQEYEYQLKVLQNKVEKFQEEVKTANDEEIARSMKEQEHKSSEISALKQELETTKTAYEVQRSQLEKYAKAELEQKCEEYEHQLKELRNTVKELEVSSDSKDQKWNMKMNRFLTVITFQFSSLQKMKLSLESTKQNVIKEQTVYAGELDLLGVKLKPLLHAAENYHVVMAENKKLFNEIQELKGNIRVYCRIRPSALGKLEKESIVEHVGENDLVVANPSKEGKDTLRSFKFNRVFSPAATQAEVYSDIQDFTRSVLDGYNVCIFAYGQTGSGKTYTMTGPNGATSETIGVNYRALNDLFRISTSRQDIVEYEIGVQMVEIYNEQVRDLLTTYASPKRTLGILTQSRPNGLVVPDASLFPVKLPSDVIKLMEIGLKNRAIAATAMNERSSRSHSVVSVHVTGKDLKTGCTMAGNLHLVDLAGSERVDRSEVIGDRLKEAQHINKSLAALGDVIFSLSQKSSHVPYRNSKLTQLLQTSLGGQAKTLMFVQINSDLSSYSETLSTLKFAERVSGVELGAARSNKEGKDFKEMMEQVSSLKSSILAKDEEIERLQAMKGLAGSRVKRNIIPRSRSSIQLQSTSPQPIDDHAQQNDFVATAETCTDSDFDGRSSDFSDGGVAAGTETDGSENSSLTEVPKPPSEKMSKGFRRTVQAMRKFGRTSSNTIPTIPTIPTAAPVKEPVKKSSGVYMHTTLTLFLTSILIQLLNFLSQI* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3140 1176 MobiDBLite consensus disorder prediction 1067 1111 - -
Vra7g3140 1176 PRINTS Kinesin heavy chain signature 725 746 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g3140 1176 PRINTS Kinesin heavy chain signature 849 866 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g3140 1176 PRINTS Kinesin heavy chain signature 880 898 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g3140 1176 PRINTS Kinesin heavy chain signature 929 950 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g3140 1176 ProSiteProfiles Calponin homology (CH) domain profile. 32 139 IPR001715 GO:0005515
Vra7g3140 1176 PANTHER KINESIN-LIKE PROTEIN KLP-3 353 415 - -
Vra7g3140 1176 PANTHER KINESIN-LIKE PROTEIN KLP-3 5 339 - -
Vra7g3140 1176 PANTHER KINESIN-LIKE PROTEIN KLP-3 501 1153 - -
Vra7g3140 1176 PANTHER KINESIN-LIKE PROTEIN KLP-3 426 486 - -
Vra7g3140 1176 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 501 1153 - -
Vra7g3140 1176 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 5 339 - -
Vra7g3140 1176 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 353 415 - -
Vra7g3140 1176 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 426 486 - -
Vra7g3140 1176 Pfam Calponin homology (CH) domain 38 136 IPR001715 GO:0005515
Vra7g3140 1176 Coils Coil 460 494 - -
Vra7g3140 1176 Gene3D - 340 385 - -
Vra7g3140 1176 Gene3D - 411 454 - -
Vra7g3140 1176 Gene3D - 491 532 - -
Vra7g3140 1176 SUPERFAMILY Calponin-homology domain, CH-domain 36 137 IPR036872 -
Vra7g3140 1176 MobiDBLite consensus disorder prediction 1088 1102 - -
Vra7g3140 1176 Coils Coil 536 570 - -
Vra7g3140 1176 Coils Coil 510 530 - -
Vra7g3140 1176 ProSiteProfiles Kinesin motor domain profile. 651 979 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g3140 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 1017 IPR027417 -
Vra7g3140 1176 Gene3D - 23 140 IPR036872 -
Vra7g3140 1176 SMART kinesin_4 649 987 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g3140 1176 Gene3D Kinesin motor domain 646 1020 IPR036961 -
Vra7g3140 1176 Coils Coil 372 456 - -
Vra7g3140 1176 Pfam Kinesin motor domain 657 977 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g3140 1176 SMART ch_5 34 137 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3140 Vra-Chr7 51187940 51195086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3140 400 979 Calmodulin-binding Proteins AT5G65930 31.942 2.51e-68 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3140 K10406 - aprc:113855795 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3140 7 51187940 51195086 Vra7g3140 7 51187940 51195086 ECH
Vra7g3140 7 51187940 51195086 Vra1g0600 1 6985353 6990960 PCT