Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3133 ATGTCTCGAATCTTCGAGTACTTCGTGGTGTGCGGGATCGGACCAGAGATTCGAACCATCGACGGAAGCAAAGGTTATTATGGCCCTGGTTGCATGTACCTTCCTTCTCTGCTCGATCAGTATCCTCCTCCAAATCACGCTCTCTATCCTCCTCCGCCGCCTCAGCTTTCCACATGTGTTTTACCCGCCGGCGTTGAATTCTACTCGTCAGGATTCGATTCCAACGATCCTTCCTCGTTTCCTCGGAGCTATCCGATTGTTTTGACCGAGGGTGATGGATCAAAAATCTATGTCAGCTGCATTTCTTTCCGGGATCTAGTTTGTGAGGATATTGTAGAGGCCTACCGGATACAGGCAAACTCATATGCTGACAAATGCATCTGTCTGGTTTCACGCTTGCCAAGTTTCAGCATATTAAGAAGTGCTCTGGAGGAAATATTTGCTCTCTGTTTTTCCTCGAAAGGAAGTAGCAAGCCACTATGGGATATTATAGCGCATATGGTGTCTAGTGTGCCATTGCCAACTCCTGGGAAGGAACGAGTTCTGTTTGCTATTGAAAGTTGTTTGCTTTCTGTGGAGGCTCCACCGAATGATTGGCTCCCCCATGCTGATATATCATTTCTGCCTATAGTGCAGTGCTTGGATGTTGACAACTTAGTGAGACTTTTTACAGCAGTGTTGCTTGAGAGAAGGATTTTGTTTCGAGCTAACAAGTATTCACTTCTTACACTTGTATCAGAGGCGATTTGTCACTTAATTTACCCTTTCCGGTGGCAGCATGTATACATTCCGTTGCTGTTTTTCAGTGGAGTAGATTATATTGATGCTCCTACACCATATATGATGGGGCTGCATTCGGGTGTTGATATTTCTGCTCTGGCAATGGATGGGGTTGTTGTTGTGGATCTTGAGTATAATCTCATTACTACCTCAGAAGAAATTCCTCCTATTCCTGAGCCAGAATTCAGCATTTTGCGTGGTGAAATTATGAAGCTAATATATCCTAATGTAATTGGAATTGATGAGATGAAGTCTGGAATATACCGTCTATCTGAACATGATTCTAAACTTAGGGGTAAGCTATGGGGAGAGGACCATGACCTTCAGCTAAGGATGATATTCCTTAAGTTTTTTGCAACACTTTTAAGCGGATATCGCAATTTCTTAGAAAATAGTGCAACTCAAGTCTTCAACACTCAAGCTTTTTTGAAGAAGCGCTCGCGATCTACTAACCAACCACCAGAGCCCATGATAGCTCAGTTCCTCGACTCTCATGGCTTCTTGGATTATTTGGAAAGAGGAGTAGGTTCTGATGAAAACAACAATAATCTGCTTGACAAGCTGCAAGATGCAATTGGAAGGGGTCAAAATCCTATGTCAATTCTTCCTTCATCCCCAGTAGAAACTGAGATTTTAACAGTATCAGATTCTGATATTGGAATATCAGGATCTGGGGCCAAATACACTTATGATAAATTCCCTGTAAATATCAGAACAGATGACCAAGAAGAAAAGAGGAAACAGACTCTTGCAGCAGTTAGTAACGCCTTTGAGTACTCAGGAAGACATGCTCCAAGTAAGGATCCTTTAGCAGATACTCTTAGTCCACTTGAGAGAGCTGCTGAAAGGGACCGCATGGTGCTAGATATTAAGGTTAAGCTGCAGGGTTTATGGCTGCGGCTTCTTAAACTGGGAGCGACAGATGATCCTCTCTCGTCTTTTGAATATGGAACAATACTTGCTTTGATTGAATCTGATGCAGAAGGGATTGGTGGTAGTGGATTTGTTGAATGTATAAGGGAGCATATACATTCGGGTTGGGACTGTCATCTCACTGAAGAACAGTTTATTGCGGTGAAAGAATTGCTTAAAACAGCTATCAATCGAGCAACATCAAGAAATGACCTGTTGACGATTAGAGATGCTCTTGAAGTTTCATCTGATATGTATAAGAAAGATAATAACAATGTGCCAGACTATTGCCAACGTCACCTTATCTCTTTACCTATTTGGGAGGAATTACGATTTTGGGAAGGATATTTTGACTATTTAATGGAGCAATCTTCAAACAAGTCTGCCAACTATGCATCTTTGGTAACAGCTCAGCTTGTTGTGTTGACATCACACATGGCTGGACTGGGACTTCCTGATAATGATGCTTGGTACATGATTGAAACAATTGCGGAAAGGAACAGCATTGGATCCAAGCAATTTATAAAAATCAGAGGGTTCTTATCTCATATCCAGCAATTACGAAATGGATACTGGGGAATCTCCTCAGCAAAGGCACAGTCTGTGTTATCACTTGGAATAACATCCCCACATCCTAAAGACGCGAAAGATGAGAACCAACAACCCACTGAGGCAACAGGTGTTGGTAGAAGCTGGGTGCAGAGTATGTTTACCAGAAATCCAACAATTAGATCCAGCTCATTTAGTCGTGTTCGTAAATGGACGACTGATGGAAGCAACTCTGTTCAAGCTTCAAATGATAATGGGACACCTCGCAAACAAGATCTGTTGAGTGGTGGCCAAAAAAAGCTTCAAACCAATGTTCGCACACTTAGGGGTCATAATGGTGCAATTACTGCTCTCCATTGTGTTACGAAAAGAGAAGTGTGGGATTTGGTGGGTGACCGGGAGGATGCTGGTTTCTTTATTAGTGGAAGCACAGATTGCTCAGTTAAGATATGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGCCATGCTAGAACTGTCCGGGCCATAAGTTCAGACAGGGGGAAGGTGGTGTCAGGATCTGATGATCACTCTGTTTTGGTGTGGGATAAGCAAACAACTCAACTACTAGAAGAGCTTAATGGCCATGATGGACCGGTCAGCTGTGTGCGCACGCTCTCAGGTGAACGGGTGTTAACTGCATCCCATGATGGCACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTCTATGCATGGAATATGATGACAATGTGGGAGTGTTGGCTGCTGGTGGAAGAGACGTGGTTGCTAACATATGGGACATCCGTGCTAGTAGGCAGATGCATAAACTTTCAGGACACACACAATGGATACGGTCTATAAGAATGGTTGGTGACACTGTGATTACCGGTAGTGATGATTGGACGGCAAGAATGTGGTCTGTTAACCGAGGAACCTGTGATGCTGTCTTAGCTTGCCATGCAGGGCCAATATTATGTGTTGAATATTCCTCTTTAGACAGAGGAATAATTACAGGTTCCACTGATGGCCTGCTACGTTTTTGGGAAAACGATGATGGAGGCATACGGTGTGCAAAAAATGTAACAATTCACAATGCTGCCATATTATCGGTCAATGCTGGGGAGCACTGGCTAGGGATTGGAGCAGCTGATAATTCTTTGTCGCTTTTTCATCGGCCCCAAGAAAGACTAGGTGGTTTTTCTGGTGCTGGGCCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCTCAGAAAACAGTTGCTATGGTGAGATGTGTTGCTTCAGACTTAGAAAGGAAACGGATATGCAGCGGCGGTCGCAATGGGCTTCTAAGGCTGTGGGATGCAACCATTAATATTTGA 3633 0.4366 MSRIFEYFVVCGIGPEIRTIDGSKGYYGPGCMYLPSLLDQYPPPNHALYPPPPPQLSTCVLPAGVEFYSSGFDSNDPSSFPRSYPIVLTEGDGSKIYVSCISFRDLVCEDIVEAYRIQANSYADKCICLVSRLPSFSILRSALEEIFALCFSSKGSSKPLWDIIAHMVSSVPLPTPGKERVLFAIESCLLSVEAPPNDWLPHADISFLPIVQCLDVDNLVRLFTAVLLERRILFRANKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDISALAMDGVVVVDLEYNLITTSEEIPPIPEPEFSILRGEIMKLIYPNVIGIDEMKSGIYRLSEHDSKLRGKLWGEDHDLQLRMIFLKFFATLLSGYRNFLENSATQVFNTQAFLKKRSRSTNQPPEPMIAQFLDSHGFLDYLERGVGSDENNNNLLDKLQDAIGRGQNPMSILPSSPVETEILTVSDSDIGISGSGAKYTYDKFPVNIRTDDQEEKRKQTLAAVSNAFEYSGRHAPSKDPLADTLSPLERAAERDRMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWDCHLTEEQFIAVKELLKTAINRATSRNDLLTIRDALEVSSDMYKKDNNNVPDYCQRHLISLPIWEELRFWEGYFDYLMEQSSNKSANYASLVTAQLVVLTSHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGISSAKAQSVLSLGITSPHPKDAKDENQQPTEATGVGRSWVQSMFTRNPTIRSSSFSRVRKWTTDGSNSVQASNDNGTPRKQDLLSGGQKKLQTNVRTLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHARTVRAISSDRGKVVSGSDDHSVLVWDKQTTQLLEELNGHDGPVSCVRTLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGVLAAGGRDVVANIWDIRASRQMHKLSGHTQWIRSIRMVGDTVITGSDDWTARMWSVNRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTIHNAAILSVNAGEHWLGIGAADNSLSLFHRPQERLGGFSGAGPKMAGWQLYRTPQKTVAMVRCVASDLERKRICSGGRNGLLRLWDATINI* 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3133 1210 SMART DENN_cls 122 306 IPR001194 -
Vra7g3133 1210 Gene3D - 802 1030 IPR015943 GO:0005515
Vra7g3133 1210 MobiDBLite consensus disorder prediction 812 845 - -
Vra7g3133 1210 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 941 - -
Vra7g3133 1210 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1210 - -
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 899 IPR001680 GO:0005515
Vra7g3133 1210 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1210 - -
Vra7g3133 1210 Gene3D - 1031 1210 IPR015943 GO:0005515
Vra7g3133 1210 ProSiteProfiles Tripartite DENN domain profile. 18 442 IPR037516 -
Vra7g3133 1210 Pfam WD domain, G-beta repeat 946 982 IPR001680 GO:0005515
Vra7g3133 1210 Pfam WD domain, G-beta repeat 1030 1064 IPR001680 GO:0005515
Vra7g3133 1210 Pfam WD domain, G-beta repeat 1069 1105 IPR001680 GO:0005515
Vra7g3133 1210 Pfam WD domain, G-beta repeat 850 899 IPR001680 GO:0005515
Vra7g3133 1210 Pfam WD domain, G-beta repeat 909 941 IPR001680 GO:0005515
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1074 1106 - -
Vra7g3133 1210 SUPERFAMILY WD40 repeat-like 851 1146 IPR036322 GO:0005515
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 950 IPR001680 GO:0005515
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 951 985 - -
Vra7g3133 1210 ProSitePatterns Trp-Asp (WD) repeats signature. 1192 1206 IPR019775 -
Vra7g3133 1210 MobiDBLite consensus disorder prediction 772 795 - -
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 1034 1073 IPR001680 GO:0005515
Vra7g3133 1210 SMART WD40_4 985 1024 IPR001680 GO:0005515
Vra7g3133 1210 SMART WD40_4 1067 1106 IPR001680 GO:0005515
Vra7g3133 1210 SMART WD40_4 1111 1148 IPR001680 GO:0005515
Vra7g3133 1210 SMART WD40_4 848 899 IPR001680 GO:0005515
Vra7g3133 1210 SMART WD40_4 1027 1064 IPR001680 GO:0005515
Vra7g3133 1210 SMART WD40_4 944 982 IPR001680 GO:0005515
Vra7g3133 1210 SMART WD40_4 904 941 IPR001680 GO:0005515
Vra7g3133 1210 SMART WD40_4 1166 1205 IPR001680 GO:0005515
Vra7g3133 1210 Pfam uDENN domain 35 103 IPR005113 -
Vra7g3133 1210 Gene3D - 202 387 IPR043153 -
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 1074 1106 IPR001680 GO:0005515
Vra7g3133 1210 SMART uDENN_cls 1 104 IPR005113 -
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 996 1033 IPR001680 GO:0005515
Vra7g3133 1210 ProSiteProfiles Trp-Asp (WD) repeats profile. 951 991 IPR001680 GO:0005515
Vra7g3133 1210 ProSitePatterns Trp-Asp (WD) repeats signature. 969 983 IPR019775 -
Vra7g3133 1210 SMART dDENN_cls 366 434 IPR005112 -
Vra7g3133 1210 CDD WD40 851 1147 - -
Vra7g3133 1210 PRINTS G protein beta WD-40 repeat signature 928 942 IPR020472 -
Vra7g3133 1210 PRINTS G protein beta WD-40 repeat signature 969 983 IPR020472 -
Vra7g3133 1210 PRINTS G protein beta WD-40 repeat signature 1192 1206 IPR020472 -
Vra7g3133 1210 ProSitePatterns Trp-Asp (WD) repeats signature. 1011 1025 IPR019775 -
Vra7g3133 1210 Gene3D - 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3133 Vra-Chr7 51118457 51135077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3133 841 1157 Acyl Lipid Metabolism Gene Families AT3G18860 25.078 2.97e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3133 - - gmx:100818305 2239.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3133 7 51118457 51135077 Vra7g3133 7 51118457 51135077 ECH