Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2786 ATGCAATCCTCGCTTTCACTCTCGTTCTCTGCCACCTCCTCCTCCGCCGCCACCGTCTCCAGATCACGCCACTCCTTCCACGTCCCCGAGGTCACGCCTCTCAATCTCCGCTTCTGCGGCTTGCGGCGTGAGGCATTTGATTCAGGTCTCTCTGCTTCTCTCAACCGCCACCACTCCCACCTCCCTCGCCGCCCTCACTCCGCTGCAGTCTCGGCCGCGCTCTCCACCAATGGCAGCCCTCCCAAATCGTTCGACTACGATTTGCTCATTATCGGCGCCGGCGTTGGTGGCCACGGCGCAGCGCTTCATGCCGTCGAGAAGGGTTTAAAAACCGCAATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACAGAGGCTGTGTTCCATCGAAAGCTCTTTTGGCAGTGAGTGGTCGTATGCGAGAACTGAAGAGCGATCATCACTTGAAGTCCTTCGGCTTACAGGTATCTGCGGCTGGGTATGACAGACAAGGAGTCGCTGATCATGCTAATAATCTTGCTTCAAAAATTCGTAACAATTTGACCAACTCAATGAAAGCGCTTGGAGTGGACATACTTACTGGTTTTGGAACCATATTGGGCCCTCAAAAGGTGAAAGTTGGCTCTTCAAACAAAGTAGTAACTGCTAAAGATATCATCATTGCTACCGGGTCTGTTCCTTTTGTACCAAAGGGCATCGAAGTTGATGGGAAGACTGTGATTACCAGTGACCATGCACTTAAACTGGAGTCTGTTCCTGATTGGATAGCAATTGTAGGAAGTGGGTATATTGGCCTTGAATTCAGTGATGTCTATACAGCACTTGGAAGTGAGGTTACTTTTGTAGAGGCTTTAGATCAACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGATTACCATACTGGAGTTTTCGCCACCAAGATCACACCTGCAAGGGATGGAAAACCTGTCTTGATCGAACTTATTGATGCAAAAACTAAGGAGCCAAAGGAGACTTTGGAGGTGGATGCTGCACTAATAGCAACTGGCAGGGCTCCATTCACACAAAATCTTGGATTGGACAATATTGATGTCGTAACACAGCGTGGCTTTGTTCCCGTGGATGAGCGCATGCGTGTAATTGATGCAAATGGCAAACTGGTGCCGCATTTATTCTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCGCAAGGAATTTCAGTGGTTGAACAAGTTACTGGAAGAGATCATGTGCTGAATCATTTAAGCATCCCAGCTGCTTGTTTCACTCATCCTGAAATAAGCATGGTTGGGTTAACAGAGCCTCAAGCAAGGGAGAAAGGGGAAAAAGAGGGGTTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCAAACACGAAGGCCCTAGCAGAAAACGAAGGAGAGGGACTTGCCAAGTTGATATACAGGCCTGACAATGGAGAGATACTGGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCTATAGCATTAGGGACACGTATTCAGGACATAAAATTTGCAGTTCATGCACATCCAACCTTGTCCGAGGTTCTTGACGAACTATTCAAATCAGCAAAGGTTAAAGCACAAGCTTCTAGCCCAGTAAGTGAACCAGTTGCAGTCTAA 1710 0.4749 MQSSLSLSFSATSSSAATVSRSRHSFHVPEVTPLNLRFCGLRREAFDSGLSASLNRHHSHLPRRPHSAAVSAALSTNGSPPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSFGLQVSAAGYDRQGVADHANNLASKIRNNLTNSMKALGVDILTGFGTILGPQKVKVGSSNKVVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFATKITPARDGKPVLIELIDAKTKEPKETLEVDAALIATGRAPFTQNLGLDNIDVVTQRGFVPVDERMRVIDANGKLVPHLFCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKAQASSPVSEPVAV* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2786 569 Gene3D - 229 356 IPR036188 -
Vra7g2786 569 Gene3D - 86 419 IPR036188 -
Vra7g2786 569 SUPERFAMILY FAD/NAD(P)-binding domain 72 427 IPR036188 -
Vra7g2786 569 PIRSF Hg-II_reductase_MerA 51 552 IPR001100 GO:0016491
Vra7g2786 569 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 437 548 IPR004099 GO:0045454
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 87 109 - -
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 119 134 - -
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 220 229 - -
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 256 281 - -
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 350 364 - -
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 398 405 - -
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 433 454 - -
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 502 517 - -
Vra7g2786 569 PRINTS Pyridine nucleotide disulphide reductase class-I signature 524 544 - -
Vra7g2786 569 Pfam Pyridine nucleotide-disulphide oxidoreductase 86 418 IPR023753 GO:0016491
Vra7g2786 569 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 436 550 IPR016156 GO:0016491|GO:0050660
Vra7g2786 569 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 86 556 IPR006258 GO:0004148|GO:0050660
Vra7g2786 569 PANTHER DISULFIDE OXIDOREDUCTASE 23 561 - -
Vra7g2786 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 88 107 - -
Vra7g2786 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Vra7g2786 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 256 274 - -
Vra7g2786 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 349 365 - -
Vra7g2786 569 PRINTS FAD-dependent pyridine nucleotide reductase signature 383 405 - -
Vra7g2786 569 Gene3D - 436 560 IPR016156 GO:0016491|GO:0050660
Vra7g2786 569 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 23 561 - -
Vra7g2786 569 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 120 130 IPR012999 GO:0016668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2786 Vra-Chr7 48126171 48132977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2786 1 561 Acyl Lipid Metabolism Gene Families AT3G16950 82.923 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2786 K00382 - gmx:100809578 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2786 7 48126171 48132977 Vra7g2786 7 48126171 48132977 ECH
Vra7g2786 7 48126171 48132977 Vra5g0076 5 600440 606146 PCT