Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2740 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGTGTCGATTTGGGTGGTCGCAGCTCAAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACGAGAGTTGAAAGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGTACTCAAAATTCAGAAATGCTTCAGAGGAAGAAAAGCTGTCAAAACTGAACAATCTAAGTTGCGAGAGCAGTTCTATGAAGCCTATGGGAAATATTGCCAAAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGCCAGTTCCTCTATTTCTTCAAGGCAGACGATATTGATGATTTTTTAGTTCTTGTTCAAATATGCCGGTTGCTTTGGTGGTTTGTTCAAAATAATGGGGACGTTGTGAATATTTTTGCGGGGGTGGATTACTCTTCCACCTATGCTTTGGTGAACTACCGAGTGAAGCAATTTGTACAGGCTTGTATTCATGCTTTGCATCAGAATAGAAATCAGCTAAAAGGCCAGCTTTTGTTGACTCCTGAGGAGTTGAATGTATCAGCTGTTCCTTTATTGGAGGTTTTAGTATTGTTAATTGACTCCAAATTGCCATGGAGCTGTAAGATAGTAGAATATCTCTTTCGAAACAATGCACTTGGCTTACTAAGAGAGATCATTCTTACAGGGAAGGGTAATGATGCAGAAAATTATTTTTCCATTGGCAAGGGTTCATCATTGGAGCGTGTGCTTATGGCTGTAGTACGTCACGTTGGTCAGGAGCCATGTATCTGTTCACATATTAATCCAAGATATACTTTTGCATCTCAGATCATCACAATTCCTTTTTTGTGGCATCTTTTCCCTAATTTACAACAGATGTTTGCCGCAGAGGACCTGAGCCAATTTTACATGCATCAAATGGCAAAGTTTGGGCAAAATATGATCAACTTTCTACCTAAGGATATATCAAATGAATTTCCTAGCCGTGCCTGTATGCTTGGAAATGTATTGGAAATTGCTGGAATTGCTTTGTCTCATCCTCTCTGTTCATTTGATATGGCAATAGACCTTGCGGCTGTCACTACAGTTTTGCTGGAGGCACTCCCATCTGCAATAACTTCCAATGGTTCTATGAGCGCTGACGATGATATGACTGGAGATGAAGTCAAGGAAATAGCTTTAGATAGGAAATTGGAGCAGCAAATTAATAATGCTGTAAATCCTCGCTTCCTTCTACAACTGACAAACATACTATTTAAAGAGATTTCATCTGTCAATGATTCAGATTATGGACCCAATGATAGAGAAGTTACTGCTGTTGATGCGGTTTGTGGGTTTTTGCATGTTACCTTCGGCAAGCTGCCACTTGAGCGAATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTATTACCCTTTGGAATTTTACAAAGAAGTGTCATGAGAACCAAAAGTGGTCATCACTCACCTCAAATGATGCACCTGGCTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTTGATAATGAAGAATTTTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGGACCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATACTACATCGTCTAATTCAGTAAAATCAGTTCCAAATAGTTCAGTTAGAAAGGGACGGTTTGTTCAGGCCATTCAACAGAGGGTTAGCATTGCAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCCAGTAACTTCCATGCTGACGGTGTGAATGACCTATTTATCTCTCAGGCTTTAATAGAAAATACGCGAGCAAATGAAATATTGAAACAGGCCCCTTTCTTGATACCATTTACTAGCAGGGTTAAAATATACTCTTCTCAACTGGCTGCTGTTAGGCAAAGGCATGGATCTCAGGCTGTATTTAGTAGGAATCGGTTCAGAATAAAACGAGACCGTATTTTAGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAAATAGTCTTCGAGGATTGATCCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGCGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCGGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGTACAACTATTTGAATGACTTGCCCTCCTTGGACCCGGAATTGTATCGCCATCTCATTTTTCTCAAGCATTATAAGGGAGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAGCTGCTTCCTGGGGGAAGAAACCTACGTGTCACTAATGAGAATGTTATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAGAGTTCGCATTTCTTGAGAGGATTTGAACAACTCATTCAGAAGGATTGGATCGATATGTTTAATGAACAAGAACTTCAGCTTCTGATATCAGGTTCAGTTGACAGCTTGGATATTGATGATTTACGGCTGCACACCAACTATGCAGGAGATTATCGTAGTGACCACTATGTTATTGAGATGTTTTGGGAAGTTCTTAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTCGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGAAATCTTGAACCTTTGTTTTGCATTCAAAGTGCTTCCAGTAATGCTGCGGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTGAAGCTTCCGCCTTATACAAGTAAGGAGCAATTGGAAACCAAACTATTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGTTAA 3072 0.4059 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVKTEQSKLREQFYEAYGKYCQNVDRNSFGPDSDFLCQFLYFFKADDIDDFLVLVQICRLLWWFVQNNGDVVNIFAGVDYSSTYALVNYRVKQFVQACIHALHQNRNQLKGQLLLTPEELNVSAVPLLEVLVLLIDSKLPWSCKIVEYLFRNNALGLLREIILTGKGNDAENYFSIGKGSSLERVLMAVVRHVGQEPCICSHINPRYTFASQIITIPFLWHLFPNLQQMFAAEDLSQFYMHQMAKFGQNMINFLPKDISNEFPSRACMLGNVLEIAGIALSHPLCSFDMAIDLAAVTTVLLEALPSAITSNGSMSADDDMTGDEVKEIALDRKLEQQINNAVNPRFLLQLTNILFKEISSVNDSDYGPNDREVTAVDAVCGFLHVTFGKLPLERIMTVLAYRTELVITLWNFTKKCHENQKWSSLTSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRTLIIILRQVLWQLLWVNHTTSSNSVKSVPNSSVRKGRFVQAIQQRVSIAVSELLSQLQDWNNRRQFTSPSNFHADGVNDLFISQALIENTRANEILKQAPFLIPFTSRVKIYSSQLAAVRQRHGSQAVFSRNRFRIKRDRILEDAYNQMSQLTENSLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFEQLIQKDWIDMFNEQELQLLISGSVDSLDIDDLRLHTNYAGDYRSDHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRNLEPLFCIQSASSNAAEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2740 1023 MobiDBLite consensus disorder prediction 1 28 - -
Vra7g2740 1023 ProSiteProfiles HECT domain profile. 682 1023 IPR000569 GO:0004842
Vra7g2740 1023 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1023 IPR044611 GO:0000209|GO:0061630
Vra7g2740 1023 PANTHER BNAC01G43970D PROTEIN 1 1023 - -
Vra7g2740 1023 Pfam HECT-domain (ubiquitin-transferase) 718 1023 IPR000569 GO:0004842
Vra7g2740 1023 CDD HECTc 661 1021 IPR000569 GO:0004842
Vra7g2740 1023 SUPERFAMILY Hect, E3 ligase catalytic domain 651 1015 IPR035983 GO:0004842
Vra7g2740 1023 Gene3D Hect, E3 ligase catalytic domain 787 866 - -
Vra7g2740 1023 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Vra7g2740 1023 SMART hect_3 675 1023 IPR000569 GO:0004842
Vra7g2740 1023 Gene3D Hect, E3 ligase catalytic domains 663 901 - -
Vra7g2740 1023 Gene3D Hect, E3 ligase catalytic domain 905 1022 - -
Vra7g2740 1023 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2740 Vra-Chr7 47671890 47691939 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2740 K10589 - gmx:100789933 1829.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2740 7 47671890 47691939 Vra7g2740 7 47671890 47691939 ECH
Vra7g2740 7 47671890 47691939 Vra10g0742 10 13446685 13474979 PCT