Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2575 ATGACGAGGCTGCTTCGTCACACTTCCCTTCTCACACGCTCGCTATTCGTCCCTAAGAGATTTGAGCTGGGATTATTTGGCACTTCTCAGATTTTGAGTTTTTCATCTAAAGGTAGAAGACGCTCCAAATCTGATGGAAGTGATTCTGGTGAAGAAAACATATCCAAGAAAGAGTTGGCCCTTCAACAAGCCCTTGATCAAATCACTTCTGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGCTCTGTCTCACCAAAATATGTTCCTGTTGTGTCTACAGGTTCTTTTGCTCTTGATATAGCACTAGGAATTGGTGGTCTTCCGAAGGGACGTGTTGTGGAAATATATGGGCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAAGCACAGAAGCAAGGAGGTTATTGTGTCTTTGTTGATGCTGAGCATGCCCTTGATAAGAGACTTGCAGAGTCTATTGGGGTGAATACAGAAAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCCCTCAGTCTCGTGGATACCTTAATACGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCACTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCATGCATTATCACTTTCTCAAAGTATACTAATTTTTATAAATCAGGTGAGGTCAAAGATTTCAACCTTTGGGGGATTTAGTGGACCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGCGTCTAAATATCAAGAGAACAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTGAATTTGGCAAGGGGATATGTAGAGAAACAGAGGTTATAGATCTAAGTGTACAACACAGACTAATCTTAAAGGCTGGCGCAATGTATTACTATAACGAACAGAATTTCCGTGGCAAGGATGCCCTGAAGAATTTCCTAGCTGAGAATTGTAGCGCATTAGAAGAACTTGAAACTAAGCTCAGAGAAAAGGTTCTTAAGGTTGAAACAGAACAGACACAAGAATCAGATGTTATTAATGGAGATGTTACCGAAGAAATTGCCTCAGTTGATTCTACTGTTGAAGAAACAGCTGTTGTAGAAGCATGA 1257 0.4185 MTRLLRHTSLLTRSLFVPKRFELGLFGTSQILSFSSKGRRRSKSDGSDSGEENISKKELALQQALDQITSAFGKGSIMWLGRSVSPKYVPVVSTGSFALDIALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKRLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQSILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRTGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELEFGKGICRETEVIDLSVQHRLILKAGAMYYYNEQNFRGKDALKNFLAENCSALEELETKLREKVLKVETEQTQESDVINGDVTEEIASVDSTVEETAVVEA* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2575 418 PANTHER RECA 1 408 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 Gene3D - 87 391 IPR027417 -
Vra7g2575 418 Coils Coil 370 390 - -
Vra7g2575 418 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vra7g2575 418 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 SMART AAA_5 110 284 IPR003593 -
Vra7g2575 418 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 408 - -
Vra7g2575 418 SUPERFAMILY RecA protein, C-terminal domain 326 380 IPR023400 -
Vra7g2575 418 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vra7g2575 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Vra7g2575 418 CDD recA 56 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vra7g2575 418 ProSiteProfiles RecA family profile 2. 255 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vra7g2575 418 TIGRFAM tigrfam_recA: protein RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2575 Vra-Chr7 46054780 46061928 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2575 K03553 - gmx:100781271 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2575 7 46054780 46061928 Vra7g2575 7 46054780 46061928 ECH
Vra7g2575 7 46054780 46061928 Vra5g0302 5 2844391 2850262 PCT