Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2058 ATGCCTTTGGAAACCCCTGAATCTGATATGTATCAGAGCAGCATTGGCGCACACCGCCTCGCCTACCGCTCTCACATATCCAAGTTTGTAAAAGCCGGTCTCATCAACCACGCCTTCCACCTGTTCGACCAAATGACCCAATCCAATTGCCGCGTCTTCAGCGTCGACTACAACCGCTTCATCGGCGTCCTCATTCGTCACTCCCGCCTCCACCTTGCCTACCACTACTACCGCCACCACGTCATCCCTCGCGGCTTCTCCCTCCTCCCGTTCACCTACTCCCGCTTCATCTCAGCCCTCTGCTCCTCCTCCAATAGCCCCCCCGTCATCCAGGACCTCCTCATCGACTTGCACGCTCTCGGCTTCGTCCCCGACATCTGGGCCTTCAACACTTACCTCAGCTTCTTGTGCCGCCACAATCGCTTAGAATCCGCCCTCGAACTCTTCCACTCCATGCCCTCCAAGGGGAGAGAGCCCGACGTTGTTTCTTATACTATTATCGTTGACGCGTTGTGCAAAGCTCAACGCTTCGACGAGGCTGCTAGGGTTTGTCGTGGTTTGACTGGCAAAGGGTTGAGCCCTGATTTTAAAGCCTGTGTTGCTATTGTTGTTGGTTTGTGCCGTGGGCGTCGCGTTGATTTGGCCTATGAGCGTCGCGTTGATTTGGCCTATGAGCTTGTTGTCGATGTGATCAAGGGTGGGGTGAAGGTTAATATCTTGGTTTACAATACTTTGATTAAAGGGTTTTGCAAAATGGGAAGGGTTGACAAGGCGACGAAGATTAAAGCGTTTATGAGCCGGAATGGGTGTGTGCCGGATTTGGTTACTCATAATATACTGTTGAATTACTGTTGTGACAAGGGGATGGTGGATGAGGCCTTGTGGATGGTGGAGACAATGGAGGCGGAGGCGGAGGCGGATTTGTATAGCTATAATGAGCTGTTGAAATGTTTTTGCAAGGCTAATATGGTGGACAAGGCTTATACGGTGCTGGTTGAGAGGATGCAGACCAAAGGACTGTGTGATGTTGTTTCGTATAATACTCTTATCACAGCATTCTGTAAGGTGCGCCGTACTAGGAGAGGTTATGAGTTGTTTGAGGAGATGTGTGGGAAGGGGATTAGGCCAGATATGGTGACGTTTAATATACTTATTGATGCCTTTCTAAGAGAAGGAAGTATCCAAGTGGTTAAGAAACTGCTTGGTGAAATGACAAGGGCGGGCATTCTTCCTGATCTTAGATGCTATACTGCAGTAGTTGATCACCTGTGCAAGACTGGAAAGGTTGATACGGCTCATAGTGTTTTCCGTGACATGGTGAAGAATGGGGTAAATCCGGATGTAATCTCTTACAATGCACTTGTAAATGGATTCTGTAAGGCTTCTAGAGTTATGGATGCCATGCGTTTATATGATGAAATGCAGAGGAATGGTTTGTACCCTGATGAGGTAACTTTCAAGTTGATAGTTGGAGGGCTTATAAAGGGGAAAGAACTTTCACTGGCCTGTAGGGTTTGGGATCAGATGATGGAGAAAGGCTTAAAACCTGACAGGCATCTTTCTGAGACTCTAGTAAATGCCTTTCTAAGAGAAGGAAGTATCCAAGTAGTTAAGAAACTGCTCGATGAAATGACAAGGGCGGGCGTTCTTCTTGATCGTAGATTCTATACTGCAGTAGTTGATCACCTGTGCAAGACTGGAAAGGTTGATACGGCTCATAGTGTTTTCCGTGACATGGTGGAGAATGGGGTAAATCCGGATGTAATCTCTTACAATGCACTTGTAAATGGATTCTGTAAGGCTTCTAGAGTTATGGATGCCATGCGTTTATATGATGAAATGCAGAGGAATGGTTTGTACCCTGATGAGGTAACTTTCAAGTTGATAGTTGGAGGGCTTATAAAGGGGAAAAAACTTTCACTGGCCTGTAGGGTTTGGGATCAGATGATGGAGAAAGGCTTAACACTTGACAGGCATCTTTCTGAGACTCTAGTAAATGCCATTCAATCAAGTGAAGCATGGAACTTCAGGCTTCTCTAA 2040 0.4696 MPLETPESDMYQSSIGAHRLAYRSHISKFVKAGLINHAFHLFDQMTQSNCRVFSVDYNRFIGVLIRHSRLHLAYHYYRHHVIPRGFSLLPFTYSRFISALCSSSNSPPVIQDLLIDLHALGFVPDIWAFNTYLSFLCRHNRLESALELFHSMPSKGREPDVVSYTIIVDALCKAQRFDEAARVCRGLTGKGLSPDFKACVAIVVGLCRGRRVDLAYERRVDLAYELVVDVIKGGVKVNILVYNTLIKGFCKMGRVDKATKIKAFMSRNGCVPDLVTHNILLNYCCDKGMVDEALWMVETMEAEAEADLYSYNELLKCFCKANMVDKAYTVLVERMQTKGLCDVVSYNTLITAFCKVRRTRRGYELFEEMCGKGIRPDMVTFNILIDAFLREGSIQVVKKLLGEMTRAGILPDLRCYTAVVDHLCKTGKVDTAHSVFRDMVKNGVNPDVISYNALVNGFCKASRVMDAMRLYDEMQRNGLYPDEVTFKLIVGGLIKGKELSLACRVWDQMMEKGLKPDRHLSETLVNAFLREGSIQVVKKLLDEMTRAGVLLDRRFYTAVVDHLCKTGKVDTAHSVFRDMVENGVNPDVISYNALVNGFCKASRVMDAMRLYDEMQRNGLYPDEVTFKLIVGGLIKGKKLSLACRVWDQMMEKGLTLDRHLSETLVNAIQSSEAWNFRLL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2058 679 Pfam PPR repeat 309 331 IPR002885 -
Vra7g2058 679 Pfam PPR repeat 523 549 IPR002885 -
Vra7g2058 679 Pfam PPR repeat 556 584 IPR002885 -
Vra7g2058 679 Pfam PPR repeat 26 50 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Vra7g2058 679 Gene3D Tetratricopeptide repeat domain 490 677 IPR011990 GO:0005515
Vra7g2058 679 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 9 527 - -
Vra7g2058 679 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 523 673 - -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 589 623 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 624 657 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 484 517 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 162 195 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 379 412 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 556 588 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 449 483 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 309 340 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 241 273 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 128 161 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Vra7g2058 679 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 303 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Vra7g2058 679 Pfam PPR repeat 408 440 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 338 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Vra7g2058 679 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 9 527 - -
Vra7g2058 679 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 523 673 - -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Vra7g2058 679 Pfam PPR repeat family 446 494 IPR002885 -
Vra7g2058 679 Pfam PPR repeat family 586 634 IPR002885 -
Vra7g2058 679 Pfam PPR repeat family 342 389 IPR002885 -
Vra7g2058 679 Pfam PPR repeat family 238 285 IPR002885 -
Vra7g2058 679 Pfam PPR repeat family 124 173 IPR002885 -
Vra7g2058 679 Gene3D Tetratricopeptide repeat domain 406 477 IPR011990 GO:0005515
Vra7g2058 679 Gene3D Tetratricopeptide repeat domain 11 109 IPR011990 GO:0005515
Vra7g2058 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Vra7g2058 679 Gene3D Tetratricopeptide repeat domain 110 216 IPR011990 GO:0005515
Vra7g2058 679 Gene3D Tetratricopeptide repeat domain 217 304 IPR011990 GO:0005515
Vra7g2058 679 Gene3D Tetratricopeptide repeat domain 305 405 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2058 269 674 Glycosyltransferase AT1G05670 30.583 3.95e-67 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2058 - - vra:106769147 1333.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2058 7 40089118 40093797 Vra7g2058 7 40089118 40093797 ECH