Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2020 ATGGTGGCAACTGCAGCTACTTCATCAATTTTTCCTGTTCCTTCTCCCTCCCCGGACTCTGGCGGAGCAGGCAACAAGCTTGTTGGTGGGCAAGCTAACCTTGGAGGACTAAAGCCCAAACTTGTGACTTCTGGTGGCTTGAAGGCAAAGGCACAAGCCCCTTCAAAAATTAATGGAAGCACAGTTGCTACATCTGTAGAAAGCTTGAAGCTTGAGGATGATTTACCTTCACCTCCCCCTAGGACTTTTATCAATCAGTTACCTGATTGGAGCATGCTTCTTGCTGCCATCACGACAATTTTCTTAGCAGCTGAAAAGCAGTGGATGATGCTTGATTGGAAACCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAGAATTGTTCAGGATGGTCTCGTCTTCCGTGAAAACTTTTCTATCAGATCATATGAGATTGGTGCCGATCGAACAGCATCTATAGAAACAGTAATGAACCATTTGCAGGAAACTGCACTGAATCATGTTAAGAGTGCTGGCCTTCTTGGTGATGGATTTGGTTCTACTCCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTCACTCGTATGCAGGTTGTGGTTGATCGCTATCCTACCTGGGGTGACATCGTTCAAGTAGACACGTGGGTTTCTGGGTCTGGGAAGAATGGTATGCGTCGTGATTGGGTTTTACGTGACTGCAAAACTGGTGAAATCCTGACAAGAGCCTCCAGCGTTTGGGTCATGATGAATAAGCTGACAAGAAGGCTGTCTAAAATTCCAGAAGAAGTCAGAGAGGAGATAGGATCTTACTTTGTGGATTCTGATCCAATTCTGGAAGAGGATAGCAGAAAACTGACTAAACTTGATGACAACACAGCAGATTATATTCGTACTGGTTTAAGTCCTAGATGGAGTGACCTTGATGTCAACCAGCATGTCAACAATGTGAAGTATATTGGCTGGATTCTGGAGAGTGCTCCACAGCCAATCTTGGAGAGTCATGAGCTTTCTTCCATGACTTTAGAGTACAGAAGGGAGTGTGGTAGGGACAGTGTGCTGGATTCCCTGACCGCTGTATCTGGTGCCAACATTGGCAATCTGGCTGACAGCGGACATGTTGAGTGCAAACACCTGCTTCGACTTGAAAATGGTGCTGAGATTGTGAGGGGTAGGACTGAGTGGAGGCCCAAACCTGTGAACAACTTTGGTTTTATGAACGAGGTTCCAGCAGAAAGCACCTAA 1251 0.458 MVATAATSSIFPVPSPSPDSGGAGNKLVGGQANLGGLKPKLVTSGGLKAKAQAPSKINGSTVATSVESLKLEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGRIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKSAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDIVQVDTWVSGSGKNGMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPEEVREEIGSYFVDSDPILEEDSRKLTKLDDNTADYIRTGLSPRWSDLDVNQHVNNVKYIGWILESAPQPILESHELSSMTLEYRRECGRDSVLDSLTAVSGANIGNLADSGHVECKHLLRLENGAEIVRGRTEWRPKPVNNFGFMNEVPAEST* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2020 416 CDD 4HBT 137 253 - -
Vra7g2020 416 Gene3D Hotdog Thioesterase 127 404 - -
Vra7g2020 416 MobiDBLite consensus disorder prediction 1 15 - -
Vra7g2020 416 MobiDBLite consensus disorder prediction 1 26 - -
Vra7g2020 416 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 1 402 IPR045023 GO:0006633|GO:0016297
Vra7g2020 416 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 297 402 IPR029069 -
Vra7g2020 416 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 131 283 IPR029069 -
Vra7g2020 416 Pfam Acyl-ACP thioesterase 134 398 IPR002864 GO:0006633|GO:0016790
Vra7g2020 416 Pfam Acyl-ATP thioesterase 1 123 IPR021113 GO:0016790
Vra7g2020 416 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 1 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2020 Vra-Chr7 39729154 39733626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2020 1 406 Acyl Lipid Metabolism Gene Families AT1G08510 77.427 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2020 K10781 - gmx:100170693 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2020 7 39729154 39733626 Vra7g2020 7 39729154 39733626 ECH