Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2010 ATGGCTGAAAATTTCGACGACCTAACCAATAAGCTTCCCGAGCTCAAATTAGATTCTAAGCAAGCGCAAGGGTTTCTATCATTTTTCAAAACCCTACCTGAGGATCCAAGGGCTATACGGCTTTTTGATCGTAGGGACTATTATACTGCCCATGGCGACAATGCAACTTTCATTGCAAAGACCTACTACCACACTACGACTGCCATGCGACAACTGGGCAATGGATCAAATGCTCTTTCCAGTATTAGTGTCAGCAGAAACATGTTTGAAACAATTGCTCGTGATCTCCTTTTGGATAGAACAGACCATTCTCTTGAGCTCTACGAAGGTAGTGGTTCTAATTGGAGACTGGTCAAAAGTGGAACGCCTGGTAATATTGGTAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCTCCTGTTATTGTTGCTTTGTCACTTAACTTCCGTGAAAATGGTTGCACCATTGGGTTAGGATTTGTTGATCTAACTAAGAGAGTGCTTGGGATGGCTGAATTCCTTGACTGTCACTTTACAAATGTGGAAGCAGCATTGGTTGCACTTGGCTGCAAAGAATGTCTTATACCCATAGAGTCTGTCAAATCTACTGAATACAGAATGTTGCGGGATGTGTTGACTAAATGTGGTGTGATGTTAACCGAGAAAAAGAAATATGAATTTAGAGCCAGGGATCTGGTGCAGGATCTTTGCAGGCTTGTTAAAGGTCCTATCGAACCAGTTCGAGATTTTGTGTCTGGATTTGAATATGCACCTGGTGCTCTGGGGGCATTACTATCTTATGCAGAGTTACTGGCAGATGAAAGCAATTATGAAAACTATACCCTTCGTAGGTACAATCTTGACAGCTATATGAGGTTAGACTCTGCAGCCATGAGAGCACTTAATGTCCTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACTTGTACTGCTGGAATGGGAAAACGGCTATTGCACATCTGGCTTAAACAGCCATTGGTAGACGTGGCAGAAATTAATTCTAGATTGGACATAGTACAAGCATTTGTAGAGGACACTGTGCTTCGGCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGACTGATGCACAATCTGCAGAAGCGACGAGCTGGTCTGCAACATATTGTTAAACTTTACCAGTCAAGTATTCGACTACCTTACATTAAAACAGCTTTGGAAATATATGATGGGCAATTTTCCTCAGTGATGAGGAGTAGGTATTTGGAACCTCTTCAGTTATGGACTGATGATGAGCACCTGAACAAATTCATTGGGCTTGTAGAAGCTTCTGTTGACCTTGATCAGCTGGAGAACAGGGAATACATGATTTCTCCAAGCTATGACTCTACACTAGCTAACCTAAAGGAACAACGAGAATTACTAGAGAGCCAAATACATAACTTGCATAGACAAACTGCTGATGATCTTGATCTGCCTATAGATAAGGCATTAAAGCTAGACAAAGGCACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAACCAAAGATAAGGAAGAAGCTCAATACCCAGTTTATTGTACTGGAAACCCGGAAAGATGGAGTGAAATTTACCAACACGAAGCTCAAAAAGCTAGGTGATAAGTATCAACAAATTCTTGAGGAGTATAAAAATTGTCAAAAGAAGTTAGTTGATAAGGTAGTTGAAACAGCGACAACCTTTTCTCAGGTGTTTGAATCTTTGGCCGAAATAATATCTGAATTGGATGTATTACTGAGCTTTGCTGATCTAGCTTCTAGTTGCCCTACTCCCTACACAAGGCCTGATATCACTCCAGCGGATGAAGGAGATATTATCTTAGAAGGCTGCAGACACCCTTGTGTGGAAGCCCAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTGTCAGAGAAAAAACTTGGTTTCAAATAATAACGGGGCCTAACATGGGTGGTAAATCAACATTCATCCGGCAGGTGGGTGTGAATATTTTGATGGCACAAGTTGGTTCATTTGTTCCTTGTGACAAAGCCAGCATATCTGTTCGTGATTGTATTTTTGCCCGTGTGGGTGCTGGTGACTGCCAACTACGTGGTGTTTCTACCTTCATGCAAGAAATGCTTGAAACTGCATCGATATTAAAAGGAGCAACTGAAAAGTCTTTGATAATCATTGATGAGTTGGGGCGTGGGACATCAACTTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCATATTGTTGAAGTTATCAAAGCACCTACTTTGTTTGCCACCCACTTTCACGAGCTGACTGCTTTAGCCCTTGAAAATGTAAACAACGATCCGCAGAAGCAAATTGTTGGCGTGGCAAACTATCATGTTAGTGCGCATATTGACTCATCAACTCGAAAGCTAACTATGCTATATAAGGTTGAACCTGGAGCTTGTGATCAGAGTTTTGGTATTCATGTTGCTGAGTTTGCTAACTTCCCTGAAAGTGTTGTTACCCTAGCTAGAGAAAAGGCGGCAGAATTAGAAGACTTTTCTCCCCCTGCAGCATCCTTAGCTGATACTACACAGGAGGTGGGTTCTAAACGTAAGAGAGTGTTTGAATCCGATGACATGTCTCAAGGGAGTGCAAGGGCACGGCAATTTCTTGAAAAATTTGTTGCTTTGCCACTGGTTTCCATGGACAAAATGCAAGCGTTGCAAGAAGTAAGGAAGTTAACAGAAAGTTTGGAGAAGGATGCCGAACACTGTAATTGGCTGAAGCAATTCTTGTAG 2826 0.4144 MAENFDDLTNKLPELKLDSKQAQGFLSFFKTLPEDPRAIRLFDRRDYYTAHGDNATFIAKTYYHTTTAMRQLGNGSNALSSISVSRNMFETIARDLLLDRTDHSLELYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVIVALSLNFRENGCTIGLGFVDLTKRVLGMAEFLDCHFTNVEAALVALGCKECLIPIESVKSTEYRMLRDVLTKCGVMLTEKKKYEFRARDLVQDLCRLVKGPIEPVRDFVSGFEYAPGALGALLSYAELLADESNYENYTLRRYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHIWLKQPLVDVAEINSRLDIVQAFVEDTVLRQDLRQHLKRISDIERLMHNLQKRRAGLQHIVKLYQSSIRLPYIKTALEIYDGQFSSVMRSRYLEPLQLWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSTLANLKEQRELLESQIHNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDKYQQILEEYKNCQKKLVDKVVETATTFSQVFESLAEIISELDVLLSFADLASSCPTPYTRPDITPADEGDIILEGCRHPCVEAQDWVNFIPNDCKLVREKTWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVNNDPQKQIVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPPAASLADTTQEVGSKRKRVFESDDMSQGSARARQFLEKFVALPLVSMDKMQALQEVRKLTESLEKDAEHCNWLKQFL* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2010 941 Pfam MutS domain II 144 283 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 SMART DNAend 314 642 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 Pfam MutS domain III 300 606 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 Coils Coil 370 390 - -
Vra7g2010 941 Coils Coil 553 573 - -
Vra7g2010 941 ProSitePatterns DNA mismatch repair proteins mutS family signature. 740 756 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 Coils Coil 473 493 - -
Vra7g2010 941 Pfam MutS domain V 662 860 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 Gene3D - 523 616 - -
Vra7g2010 941 Gene3D - 294 522 - -
Vra7g2010 941 PIRSF MSH2 8 941 IPR011184 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 SUPERFAMILY DNA repair protein MutS, domain III 297 611 IPR036187 -
Vra7g2010 941 SUPERFAMILY DNA repair protein MutS, domain II 145 309 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 SMART mutATP5 659 857 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 Gene3D MutS, connector domain 123 291 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 913 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Vra7g2010 941 Pfam MutS family domain IV 469 566 IPR007861 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 CDD ABC_MSH2_euk 630 860 - -
Vra7g2010 941 Gene3D - 617 938 IPR027417 -
Vra7g2010 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 861 IPR027417 -
Vra7g2010 941 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vra7g2010 941 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 913 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2010 Vra-Chr7 39615574 39623982 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2010 K08735 - gmx:100792272 1737.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2010 7 39615574 39623982 Vra7g2010 7 39615574 39623982 ECH