Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1978 ATGCCTACCGTCAGCGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAGAACTTACACGCAAGAGGAATTCGAGGACTTGTGCTTCCGTTTCGGGATCGAGCTCGATGATGTTACGACGGAGAAGGCAATTGTAAGGAAAGAAAAGCATTTGGATGAAGAAGAAGCTGATGAGGACGAAGAAGTTATCTACAAGATCGAAGTTCCCGCCAATAGATATGATCTCCTGTGCCTTGAAGGGCTTGCTCAAGCCCTCCGTGTTTTCTGTGAGATTCAGGAGATCCCCAATTATAAACTATCTGACATTAGTAAGAATGAAATGCTGAAGATGCATGTGAAGCCGGAGACTTCTGTGGTTCGTCCATTTGTTGTATGTGCTGTATTAAGAGGTGTAACTTTTGATAAAGCGAGATACAACAGCTTTATCGATCTCCAGGACAAGCTTCACCAAAACATATGTCGGCGAAGAACACTTGTTGCCATCGGAACCCATGATCTGGATAAATTGGAGGGTCCTTTCACCTATGAGGCTTTGCCACCTTCAAGTATAACTTTTACGCCACTAAAGCAGGAAAGGAGCTTCAGGGCTGATGAGTTGATGGAGTTCTACAAATCAGATTTGAAACTAAAGAAATTCTTGCATATAATTGAGGATTCCCCTGTCTTCCCTGTATTATATGACAGTAAGAGAACTGTGTTATCTTTACCCCCAATTATTAATGGTGCTCACTCAGCCATCACTCTGGAGACAAAGAATGTGTTTATTGAATGTACTGCTACTGATCTGACAAAGGCAAAGATTGTTTTAAATACAATGGTAACAGCCTTCTCAGAATATTGTGCGGACAAGTTTGTCATTGAACCAGTTGAAGTGATTTCTTCTGATGGCAAGTCAAACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCTTTGGAGGCAGAAGAGGTCACTAAGTTCTTAAATCGGATGCAATTGCATGCCAAGCAGTCTACGTCTGCTAAAAAGCAGTGTAACTTTATAGTGTCTGTACCTCCTACAAGAAGTGATGTTCTTCACCCTTGTGATGTCATGGAGGATGTCGCAATTGCTTATGGATTCAATAGTATTAAGGATAAAGCTGTAGCAGATAATAAGGGCTCAAAGAGGCTGGCTGGTTCCCTGACTCTACTTCCACTGAACGAGATAAGTGACCTTATCCGAAAAGAGGTTGCATTGATTGGGTTTACCGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGTAAAGACGATAAATCTAGAGCAGTTATCATTGGAAACCCCAGATCTTCGGACTTTGAGGCTGTGCGAACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCAAAGCCTATAAAGATTTTTGAAGTGGGTGATGTAGCACTTCTGGATGATACTAGAGATGTTGGTGCAAAAAATCTTCGCCAACTTGGTGCTCTGTACTGTGGTGCTAATGCCGGATTTGAGATAATTCACGGATTGGTCGACAGAGTAATGGAAAAGAACGGTGTTCCCTTTGTTTCACCTGGTGATAAGTCGGGTTATTATATTGAGCGGTCAGATGAACCCGAGTTTCTTGCCGGTCGACAAGCTAGAATCATTTACAAGGGAAAGCATGCTGGCACTTTTGGCATTGTTCATCCCGAGGTACTCAACAACTTCGACATTCCTGATCCATGCTCCTTTGTTGAACTTAACATAGAAAGCTTCTTGTGA 1812 0.4227 MPTVSVGRDRLFAALGRTYTQEEFEDLCFRFGIELDDVTTEKAIVRKEKHLDEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRVFCEIQEIPNYKLSDISKNEMLKMHVKPETSVVRPFVVCAVLRGVTFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSITFTPLKQERSFRADELMEFYKSDLKLKKFLHIIEDSPVFPVLYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTAFSEYCADKFVIEPVEVISSDGKSNIYPDLSVYNMEVSLSYITGLIGVSLEAEEVTKFLNRMQLHAKQSTSAKKQCNFIVSVPPTRSDVLHPCDVMEDVAIAYGFNSIKDKAVADNKGSKRLAGSLTLLPLNEISDLIRKEVALIGFTEVLTFILCSKKENFAMLNRKDDKSRAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDVALLDDTRDVGAKNLRQLGALYCGANAGFEIIHGLVDRVMEKNGVPFVSPGDKSGYYIERSDEPEFLAGRQARIIYKGKHAGTFGIVHPEVLNNFDIPDPCSFVELNIESFL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1978 603 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 603 IPR045060 GO:0004826|GO:0006432
Vra7g1978 603 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 603 - -
Vra7g1978 603 SUPERFAMILY PheT/TilS domain 112 261 - -
Vra7g1978 603 Gene3D - 100 305 IPR020825 -
Vra7g1978 603 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 603 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Vra7g1978 603 Gene3D - 1 89 - -
Vra7g1978 603 SMART B3_4_2 119 281 IPR005146 GO:0003723|GO:0004826
Vra7g1978 603 SUPERFAMILY Class II aaRS and biotin synthetases 376 602 IPR045864 -
Vra7g1978 603 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 89 IPR040659 -
Vra7g1978 603 SMART B5_2 306 379 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Vra7g1978 603 Gene3D Bira Bifunctional Protein; Domain 2 403 603 IPR045864 -
Vra7g1978 603 ProSiteProfiles B5 domain profile. 304 384 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Vra7g1978 603 CDD PheRS_beta_core 404 602 IPR041616 -
Vra7g1978 603 SUPERFAMILY Putative DNA-binding domain 5 95 IPR009061 -
Vra7g1978 603 Gene3D - 307 382 - -
Vra7g1978 603 Pfam B3/4 domain 120 280 IPR005146 GO:0003723|GO:0004826
Vra7g1978 603 SUPERFAMILY Putative DNA-binding domain 308 383 IPR009061 -
Vra7g1978 603 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 404 599 IPR041616 -
Vra7g1978 603 Pfam tRNA synthetase B5 domain 309 379 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1978 Vra-Chr7 39299773 39308490 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1978 K01890 - gmx:100805249 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1978 7 39299773 39308490 Vra7g1978 7 39299773 39308490 ECH