Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1949 ATGGCAATGCCGGAAACCATCCCTCTGACTACTCCCAGTGCTCAAGTTGTTGGAAATGCCTTTGTGGAGCAATATTATCACATTTTGCACCAATCTCCGAACTTGGTGCACAGGTTTTATCAGGATTCAAGTTTCTTAACCAGATCAGACAACAATGGTGTGATGACAACTGTGACAACTGTACAAGAAATCCATGAGAAGATTATTTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACCGCAGATGCTCAGGAGTCACATAAGGGAGGTGTGATAGTTTTAGTAACTGGGTGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTTTGTCTTAAATGATGTCTTTCGGTACATTGAGGTGAATGATGCACCACAGTTAAATTCTGCCTCAGTAAATGTCATCAGTGAAAATGCTGAGACAGTGCATGAGCCAGAATCAGTTCTAGAGGAAACACATGCTCCCAAAGTTCTTGTGGAAGACACTGCAACTTCATCTGTGGCGGAGGATGAAAACCAAAATAATGGCGGTGAAGTCTATCATCCTCAGGATGAAGAAGAAGGATCAGTTATTGATGAAGAGGTCGCTGAACCCCCTACTGACTTAAGTCAGAATGAAATTGTTACGGTTCATGATTCAACTTCTGCAGCTCAGGATGATGCACCAAGGAGATCATATGCATCCATTGTAATGAAAAGTAATGTAGCATCTGGCCATGTCTACGTACCCAGCCGAGCTGCTAGAGTGGCATCTGCTAAATCCAATGAACAATGGTCTACTACTGCCAAATCAACCCCTGTGCCTGAGTCATTTGCTCCTATTGGTGATAGTGCACCTGAGAGTAGTGACCTTCATGAAGAAGTTGAAGGTCACTCCATATATATACGAAACTTGCCATTTAGTGCAACAGTTGAGCAACTTGAAGAAGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCAAAGTGCACTTGAGGCTTCACCTATCTCTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAAAGAACTACTACACGAGTAAGCGGTAGTGGGAGAGGGAGGTATCCTCCAGGAAGAGGTGGTTTCCGAAGCGACAGTTTCAGAGCACGTGGGAAATTTGGTGGTGGACGAGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAAGCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGAGGGCGTGGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCATCATCTTCAGCAGCATGA 1398 0.4349 MAMPETIPLTTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLTRSDNNGVMTTVTTVQEIHEKIISLNYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVRRKFSQTFFLAPQEKGYFVLNDVFRYIEVNDAPQLNSASVNVISENAETVHEPESVLEETHAPKVLVEDTATSSVAEDENQNNGGEVYHPQDEEEGSVIDEEVAEPPTDLSQNEIVTVHDSTSAAQDDAPRRSYASIVMKSNVASGHVYVPSRAARVASAKSNEQWSTTAKSTPVPESFAPIGDSAPESSDLHEEVEGHSIYIRNLPFSATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMQSALEASPISVGERQAVVEEKRTTTRVSGSGRGRYPPGRGGFRSDSFRARGKFGGGRGYGRNEFRNQGEFSGQARSSQRPNQNGGGRGGGRQGVGNRNSTPSSSAA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1949 465 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Vra7g1949 465 MobiDBLite consensus disorder prediction 178 198 - -
Vra7g1949 465 CDD RRM_SF 308 365 - -
Vra7g1949 465 MobiDBLite consensus disorder prediction 180 194 - -
Vra7g1949 465 MobiDBLite consensus disorder prediction 379 465 - -
Vra7g1949 465 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 458 IPR039539 -
Vra7g1949 465 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Vra7g1949 465 Gene3D - 298 387 IPR012677 -
Vra7g1949 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 365 IPR000504 GO:0003723
Vra7g1949 465 MobiDBLite consensus disorder prediction 425 444 - -
Vra7g1949 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 382 IPR000504 GO:0003723
Vra7g1949 465 Gene3D - 6 137 - -
Vra7g1949 465 CDD NTF2 13 135 IPR018222 -
Vra7g1949 465 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Vra7g1949 465 SMART rrm1_1 307 378 IPR000504 GO:0003723
Vra7g1949 465 MobiDBLite consensus disorder prediction 272 300 - -
Vra7g1949 465 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 458 - -
Vra7g1949 465 SUPERFAMILY RNA-binding domain, RBD 302 410 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1949 Vra-Chr7 38953399 38960411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1949 K24983 - gmx:100801253 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1949 7 38953399 38960411 Vra7g1949 7 38953399 38960411 ECH