Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1946 ATGGCGTCCTTACCCAGTTTTGCTCCTTTTGTGTTTCTATTTCTTGTTATTGGGTGCACTGCAAGGCCTTTTTATCCTCTTCCCAACAATGTTGATGGGGGAAATAGGAAGCCCCTACAAACTTTTCGCCCATATAACATTGCACATCGCGGTTCAAATGGAGAGATTCCTGAAGAAACTTCTGCTGCATATACGAAAGCTATTGAAGAAGGTGCAGACTTCATTGAAGCTGATATCTTATCATCCAAAGATGGTGTTCTTATATGTTTCCATGATGTCTACCTTGATGATACTACTGACATTGCAAATCACAAGGAGTTTGCTGATCGTAAAAGAACGTATGAAGTCCAAGGGGAAAACATCACTGGGTTCTTCACTGTTGATTTCACATTGAAGGAGTTAAAGTCATTGAGGGTGAGACAAAGGTATAAATTCAGGGATCAACAGTTTAATGGAAAGTTTCAAATCATCACTTTTGAAGAGTTCATTAACATAGCACTTGATGCACCCAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTATTTATCAATCAACATGTTAAATGGTCAGATGGCAAAAAATTTGAAGACAAGTTTGTGGAGACACTTCAGAAATATGGGTTAAAGGGTTCCTACCTGTCAAATAATTGGCGGAGACAACCTGTATTCATTCAGTCATTTGCTCCAACTTCACTCGTGTATATAGCAAATAAGACGGACTTGCCCAAAATTTTCTTAATTGACGATGTTGACATTCCAACGCAAGACACCAATCAGTCATACTGGGAGATTACATCTGATGAATACCTTAACTACATAAAACAATATGTTGTGGGAATTGGACCATGGAAGGACACGTTAGTACCTGTGGTAAATAATTATATGGCAACTCCTACTGATATTGTCTCCAGGGCACATGCTCATAATCTGCAGGTGCATCCATATACTTACCGAAATGAAAACTGTTTTTTGCACTTCAACTTCAGTCAAGATCCGTATGTGGAGTATGATTACTGGATCAACAAGATAGGTGTTGATGGTCTGTTTACAGACTTCACTGGTAGCCTCCATCGTTTTCAGGAATGGACCTCTAAACGTCAAGATGATGATGACGACGACGATGATGCATCCAAGTTATTGCATAAAATTGCATTGTTGCTCTCCTCTTATAATTGA 1182 0.3883 MASLPSFAPFVFLFLVIGCTARPFYPLPNNVDGGNRKPLQTFRPYNIAHRGSNGEIPEETSAAYTKAIEEGADFIEADILSSKDGVLICFHDVYLDDTTDIANHKEFADRKRTYEVQGENITGFFTVDFTLKELKSLRVRQRYKFRDQQFNGKFQIITFEEFINIALDAPRVVGIYPEIKNPVFINQHVKWSDGKKFEDKFVETLQKYGLKGSYLSNNWRRQPVFIQSFAPTSLVYIANKTDLPKIFLIDDVDIPTQDTNQSYWEITSDEYLNYIKQYVVGIGPWKDTLVPVVNNYMATPTDIVSRAHAHNLQVHPYTYRNENCFLHFNFSQDPYVEYDYWINKIGVDGLFTDFTGSLHRFQEWTSKRQDDDDDDDDASKLLHKIALLLSSYN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1946 393 PANTHER OS01G0763600 PROTEIN 8 392 - -
Vra7g1946 393 CDD GDPD_ScGlpQ1_like 44 355 - -
Vra7g1946 393 Pfam Glycerophosphoryl diester phosphodiesterase family 49 356 IPR030395 GO:0006629|GO:0008081
Vra7g1946 393 SUPERFAMILY PLC-like phosphodiesterases 44 360 IPR017946 GO:0006629|GO:0008081
Vra7g1946 393 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 8 392 - -
Vra7g1946 393 Gene3D Phosphatidylinositol (PI) phosphodiesterase 42 361 IPR017946 GO:0006629|GO:0008081
Vra7g1946 393 ProSiteProfiles GP-PDE domain profile. 44 362 IPR030395 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1946 Vra-Chr7 38938955 38942760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1946 9 392 Acyl Lipid Metabolism Gene Families AT1G74210 72.727 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1946 K01126 - gmx:100778145 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1946 7 38938955 38942760 Vra7g1946 7 38938955 38942760 ECH