Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1930 ATGGTGAAGATATGTGGAATTGGAGCTGGGTACGTGGGGGGTCCTACAATGGCTGTGATTGCCCTGAAATGTCCGTCGATTGAAGTGGCTGTGGTTGACATATCGGAGTCTCGCATATCAGCCTGGAATAGCAAGAAACTACCTTTTTATGAGCCTGGCCTAGAAGAAGTGGTGAATCAGTGTAGAGGAAAGAATCTCCTCTTCAGCAGCGATGTGGAAAAGCACGTTTATGAAGCAGACATAATCTTTGTTTCAGTTAACACCCCCACAAAAATCAAAGGAATCGGAGCTGGTAAAGCTGCAGACTTAACTTATTGGGAAAGTGCGGCTAGGATGATAGCTGATGTTTCCAACTCTGATAAGATTGTTGTCGAGAAATCCACTGTCCCAGTGAGAACAGCTGAGGCAATTGGGAAAATCCTAAGTGAAAACAGTAAAAGCAAGGGAATCAAGTACCAAATTCTGTCAAATCCTGAGTTTCTCTCTGAGGGAACAGCTATTCAAGACCTTCTGAACCCTGACCGGGTTCTTATTGGAGGGAACCAAGACCCTCAAGGTTTAGATGCAATCCAAAAGTTGAAGGACATATACGCTTATTGGGTGCCTCAAGACAGAATCATAACAACAAATTTGTGGTCGGCAGAACTGTCCAAGTTAGCTGACAATGCCTTCTTAGCTCAAAGGATTTCATCTATCAATGCTATGTCAGCTTTATGTGAAGCCACCGGGGCCGAAGTCTCACAAGTTTCTCTTGCTCTCGGGAAAAACACCAAAATTGGGCCAAAGTTTCTGAATGCCAGTGTTGGTTTTGGTGGTTCTTGCTTTCAAAAGGACATAATGAACTTGGTGTACATATGTGAGAGCAATGGTCTCACCCAAGTGGGAAATTACTGGAAAGAAGTGATCAAGGTGAATGAGTACCAAAAGAGTAGGTTTGTGCACAGGGTTGTGACTTCAATGTTCAACACAGTTTCTGGTAAGAAGATTGGAATTCTGGGGTTTGCCTTCAAGAAGGACACGAGTGACACAAGGAAAAGTCCTGCAATTGATGTTTGCAAAGGTCTTTTGGGAGATAATGCGTGTTTGAGCATCTATGATCCACGCGTTACTGAGCATCAGATTGAAAAGGAGCTGTGTATGGATGGTGTTGAATGTGTTAATGTTGTTGGAGATGCTTATGAGGCAACTAGAGATGCTCATGGACTATGCATTCTTACAGAGTGGGATGAGTTCAAGACAATTGACTATCAAAGAGTGTACCAGAACATGGAGAAACCAGCTTTTGTGTTTGATGGTAGAAACATCTTGGATGTTCACAAGTTAAGGGAAATTGGATTCATTGTTTACTCAATTGGGAACCCTTTAGACCAATGCCTCATCAACATCAACATCATCAATTGA 1401 0.4276 MVKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISESRISAWNSKKLPFYEPGLEEVVNQCRGKNLLFSSDVEKHVYEADIIFVSVNTPTKIKGIGAGKAADLTYWESAARMIADVSNSDKIVVEKSTVPVRTAEAIGKILSENSKSKGIKYQILSNPEFLSEGTAIQDLLNPDRVLIGGNQDPQGLDAIQKLKDIYAYWVPQDRIITTNLWSAELSKLADNAFLAQRISSINAMSALCEATGAEVSQVSLALGKNTKIGPKFLNASVGFGGSCFQKDIMNLVYICESNGLTQVGNYWKEVIKVNEYQKSRFVHRVVTSMFNTVSGKKIGILGFAFKKDTSDTRKSPAIDVCKGLLGDNACLSIYDPRVTEHQIEKELCMDGVECVNVVGDAYEATRDAHGLCILTEWDEFKTIDYQRVYQNMEKPAFVFDGRNILDVHKLREIGFIVYSIGNPLDQCLININIIN* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1930 466 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 434 IPR017476 GO:0016616
Vra7g1930 466 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 462 IPR028356 GO:0003979
Vra7g1930 466 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 204 IPR036291 -
Vra7g1930 466 Gene3D - 211 242 - -
Vra7g1930 466 Gene3D - 243 464 - -
Vra7g1930 466 PIRSF UDPglc_DH_euk 1 464 IPR028356 GO:0003979
Vra7g1930 466 Gene3D - 1 210 - -
Vra7g1930 466 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 462 - -
Vra7g1930 466 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Vra7g1930 466 SMART UDPG_MGDP_dh_C_a_2_a 330 438 IPR014027 GO:0016616|GO:0051287
Vra7g1930 466 PIRSF UDPglc_GDPman_dh 2 453 IPR017476 GO:0016616
Vra7g1930 466 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 212 311 IPR008927 -
Vra7g1930 466 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 331 437 IPR014027 GO:0016616|GO:0051287
Vra7g1930 466 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 212 306 IPR014026 GO:0016616|GO:0051287
Vra7g1930 466 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 317 449 IPR036220 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1930 Vra-Chr7 38805028 38806872 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1930 K00012 - gmx:100781197 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0994 1 11845768 11848375 Vra7g1930 7 38805028 38806872 ECH
Vra7g1930 7 38805028 38806872 Vra7g1930 7 38805028 38806872 ECH