Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1925 ATGTCCGGTGCAAAGAAATCTCATTTGAAGAATGCTAAACCTAGTTCTGTTGAATCTTGGACTAATCCATTTGATTCTGATGACGAGGAGAAGAATACCAAAAAGTATTCTTCCTCGAGAAAGACTTCTTCGGATCGCGCACTAGTTACGCTGGAAGTTAACACCAACCCCTTTAATGATGACATTGATGCCACTAAGAAATCATCATCGTATGCCTTTCAATCGGCCAACCGGAACAGGTACAAGAATGATTTTCGCGATTCAGGTGGATTAGAGAATCAATCGGTTCAAGAACTGGAGAGTTATGCTGTTTACAAGGCTGAAGAGACCACGAATTCAGTCAACAATTGTTTGAAGATTGCAGAGAATATAAGAGAGGATGCCACCAAAACACTAGTCACCCTTCATCAACAGGGTGAACAAATTACCAGGAGTCACCATGTTGCTGCTGACATTGACCACGATTTAAGTCGGGGGGAAAAGCTCTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACACGAGCAATAACAGGCCCAGTTATTGTTGGAGATGACCCAGTGAGGAGCAAGGGCAGTCATCTTGAGCAGAGAGAGAAGTTAGGACTGACATCTGGCCCCAAAGGGCAGTCCAAGCTGCGGACCCCACCTCAAGAACCATCCAATGCACTTGAAAAAGTAGAGGTTGAAAAAGTGAAGCAAGATGATGCACTATCAGATTTAAGTGATCTGCTGGGAGAGCTTAAAGATATGGCTGTTGACATGGGATCCGAGATTGAGAGGCATAACAAAGCATTGAATCATCTGTACGATGATGTGGATGAGTTGAATTTCCGAATGAAAGGTGCTAATCAACGTGGCCGTCGCTTGCTCGGAAAATAA 897 0.4415 MSGAKKSHLKNAKPSSVESWTNPFDSDDEEKNTKKYSSSRKTSSDRALVTLEVNTNPFNDDIDATKKSSSYAFQSANRNRYKNDFRDSGGLENQSVQELESYAVYKAEETTNSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHHVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAITGPVIVGDDPVRSKGSHLEQREKLGLTSGPKGQSKLRTPPQEPSNALEKVEVEKVKQDDALSDLSDLLGELKDMAVDMGSEIERHNKALNHLYDDVDELNFRMKGANQRGRRLLGK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1925 298 Gene3D - 90 167 - -
Vra7g1925 298 MobiDBLite consensus disorder prediction 1 48 - -
Vra7g1925 298 SUPERFAMILY SNARE fusion complex 236 296 - -
Vra7g1925 298 CDD SNARE_SNAP25N_23N_29N_SEC9N 102 165 IPR044766 GO:0005484|GO:0031201
Vra7g1925 298 MobiDBLite consensus disorder prediction 187 228 - -
Vra7g1925 298 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 298 - -
Vra7g1925 298 CDD SNARE_Qc 238 294 - -
Vra7g1925 298 SMART tSNARE_6 99 166 IPR000727 -
Vra7g1925 298 SMART tSNARE_6 228 295 IPR000727 -
Vra7g1925 298 MobiDBLite consensus disorder prediction 24 41 - -
Vra7g1925 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 238 295 IPR000727 -
Vra7g1925 298 Gene3D - 230 297 - -
Vra7g1925 298 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 298 - -
Vra7g1925 298 SUPERFAMILY SNARE fusion complex 94 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1925 Vra-Chr7 38763979 38766651 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1925 K18211 - gmx:100809874 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1925 7 38763979 38766651 Vra7g1925 7 38763979 38766651 ECH