Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1887 ATGTTGGGGGAGGGAATGGAAGAAGGATGGGTTGTTTGTCTGCTTAGCAAGTGCAGAAACCTGAAATCCACGAAGCAAATCCACTGTCACATGGTGAAAACCGGTCTTCACGCAGACCCCTTTGTGTTTGGCAAACTCCTCCTTCACTGTGCCGTTTCCATCTCCGATGCTCTCCACTACTCTCTCAGCCTCTTCCACCACTTCCCCAACCCCGACACCTTCATGCACAACACCCTCATTCGCGGACTCTCTCTCTCCCAAACCCCTCTCTTTTCCCTCCACCCGTTCATCCAACTGCGTCGCCTATCCACCCTTTCCCCCGACAGCTTCTCTTTCGCCTTCGTCCTCAAAGGGGTCGCCAACTCTCGCCAACTCAGACCCGGCATTCAGCTGCATTCTCAAGCTTTTCACCTCGGCTTTGACACCCATATCTTCGTTGGGACAACGTTGATCAGCATGTACGCTGAATGCGGGGACTCCCTCTCCGCGCGACGAGTGTTCGATGAAATGTCTCAACCAAACGTCGTCGCATGGAACGCTGCTCTCACTGCGGCTTTCAGGTGTGGTGACGTGGAAGGCGCGGGGGACGTGTTTGGGCGAATGCCTGTTCGGAATTTAACCTCGTGGAATGCCATGCTTGCTGGTTATGCCAAGGCAGGTGAGCTTGGGTTGGCGAGGAGAGTTTTTTATGATATGCCTCTTAGAGATGAGGTTTCCTGGAGCACTATGATTATTGGGTTTGCTCAAAATGGTTGTTTTGACGAGGCTTTTGGGTTTTTCAGGCAGTTGCTGCGCGAGGGAATTGGGGCAAATGAAGTGAGCCTCACTGGGGTGTTGTCTGCCTGTGCACAGGCTGGGGCGTTTGAGTTTGGGAAGATTTTACATGGGTTTCTGGAGAAAGCTGGGTTTCTTTATGTTGGTTCTGTGAATAATGCTCTCATAGATACCTACTCCAAGTGTGGGAATGTAGCTATGGCTAGGTTGGTTTTTCAAAATATGCCAGTGGCGAGGAGCATTGTTTCTTGGACATCGATAATAGCAGGGCTTGCTATGCATGGTTATGGAGAAGAGGCAATACAGCTTTTCCATGAGATGGAAGAGACTGGAGTTAGGCCAGATGGAATTACTTTTATATCACTACTATATGCTTGTAGCCATAGTGGCTTGGTTGAGGAAGGGTATGGTTTTTTTTCTAAGATGAAGAATGTGTACGGTATTGAACCTGCCATTGAGCATTATGGTTGCATGGTTGATCTGTACGGTCGAGCTGCTAGGTTGCATAAGGCCTATGAATTTATATGTGAAATGCCAGTTTCTCCTAATGCTATCATTTGGAGGACACTCCTTGGGGCTTGTAGCATTCATGGTAATATTGAATTGGCAGAGCTTGTGAAAGCAAGGCTGGCTGAAATGGACCCAGACAACTCTGGTGACCATGTACTACTCTCAAATGTTTACGCTGTTGCAGGGAAATGGAAGGATGTTGCCAGCATCAGAAGAACCATGAGTGAGCATAGCATGAAAAAAACTCCTGGTTGGAGCATGATAGAAATTGACAAGGTCATCTATTGTTTTGTGGCAGGAGAAAAACCTAATGAGGTCACAAAAGAGGCTCATGAAAAACTGAGGGAAATAATGTTGAGACTCAGAGTAGAAGCAGGTTATGCGCCACAGCTAAGGATTGTTCTGCATGATATTGAAGAGGAAGAAAAAGAAGATTCAGTTTCTAAGCACAGTGAGAAGCTTGCTGTAGCTTTTGGAATAGCAAAACTTCCCAAAGGAAGGATTTTAAGAATTGTGAAGAATCTTAGGGTTTGTGGGGACTGCCATACCGTGATGAAGCTGATTTCTAAAATTTATGGAGTAGAAATCGTAGTGAGAGATAGAAGCCGCTTCCACTCGTTCAGAGATGGATTCTGTTCTTGCAGAGATTACTGGTGA 1941 0.4693 MLGEGMEEGWVVCLLSKCRNLKSTKQIHCHMVKTGLHADPFVFGKLLLHCAVSISDALHYSLSLFHHFPNPDTFMHNTLIRGLSLSQTPLFSLHPFIQLRRLSTLSPDSFSFAFVLKGVANSRQLRPGIQLHSQAFHLGFDTHIFVGTTLISMYAECGDSLSARRVFDEMSQPNVVAWNAALTAAFRCGDVEGAGDVFGRMPVRNLTSWNAMLAGYAKAGELGLARRVFYDMPLRDEVSWSTMIIGFAQNGCFDEAFGFFRQLLREGIGANEVSLTGVLSACAQAGAFEFGKILHGFLEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGYGEEAIQLFHEMEETGVRPDGITFISLLYACSHSGLVEEGYGFFSKMKNVYGIEPAIEHYGCMVDLYGRAARLHKAYEFICEMPVSPNAIIWRTLLGACSIHGNIELAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVASIRRTMSEHSMKKTPGWSMIEIDKVIYCFVAGEKPNEVTKEAHEKLREIMLRLRVEAGYAPQLRIVLHDIEEEEKEDSVSKHSEKLAVAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKIYGVEIVVRDRSRFHSFRDGFCSCRDYW* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1887 646 Pfam DYW family of nucleic acid deaminases 554 646 IPR032867 GO:0008270
Vra7g1887 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vra7g1887 646 PANTHER OS01G0913400 PROTEIN-RELATED 14 586 - -
Vra7g1887 646 Gene3D Tetratricopeptide repeat domain 93 204 IPR011990 GO:0005515
Vra7g1887 646 Gene3D Tetratricopeptide repeat domain 309 550 IPR011990 GO:0005515
Vra7g1887 646 Gene3D Tetratricopeptide repeat domain 205 305 IPR011990 GO:0005515
Vra7g1887 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 235 IPR002885 -
Vra7g1887 646 Pfam PPR repeat 238 268 IPR002885 -
Vra7g1887 646 Pfam PPR repeat 311 333 IPR002885 -
Vra7g1887 646 Pfam PPR repeat 148 171 IPR002885 -
Vra7g1887 646 Pfam PPR repeat 176 205 IPR002885 -
Vra7g1887 646 Pfam PPR repeat 412 437 IPR002885 -
Vra7g1887 646 Pfam PPR repeat 208 233 IPR002885 -
Vra7g1887 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vra7g1887 646 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Vra7g1887 646 TIGRFAM PPR: pentatricopeptide repeat domain 208 233 IPR002885 -
Vra7g1887 646 TIGRFAM PPR: pentatricopeptide repeat domain 238 271 IPR002885 -
Vra7g1887 646 Pfam PPR repeat family 338 385 IPR002885 -
Vra7g1887 646 Pfam E motif 455 517 IPR046848 -
Vra7g1887 646 PANTHER - 14 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1887 Vra-Chr7 38391131 38394646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1887 102 646 Glycoside Hydrolase AT3G49170 35.919 8.35e-122 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1887 - - gmx:106796767 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1887 7 38391131 38394646 Vra7g1887 7 38391131 38394646 ECH