Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1685 ATGAAGATGATGAGTGAGATGTGGACAACAATGGGGTCAACTTTAGCTAGCTTCATGTTCTTGTGGACGATCATGAGGCAGTACTGTCCCTACGGGGTTCAACGTTTCTTGGAGAAGTACACACATAGGATCATGAATTACTTTTCTCCTTATATTCGAATCTCCTTCCACGAGTACATGGGAGACAGGCTAAAGCGCAGTGAGGCCTATGCGGCTGTGGAGGCATATCTCAGTGCCAACACATCAAAGAGTGCTAAAAGGCTCAAAGCTGAACTGGGTAAGGATAGCAGCAACTTGGTTTTGACTATGGATGAGTATGAAAGGGTAACGGATGAGCATAAGGGTGTTAAAGTTTGGTGGGTCTCTAACAAAGTGATGTCACCAACCAGGTCTTCAATGTCCTATTATCCAGAACAGGAAAGAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGAGACCTTATAACTGAGTCCTATTTGGAGCATGTGATGAGGGAGGGGAAGGAGATTCGTCTGAGGAACAGGCAGAGGAAGTTGTACACTAATAGCCCTGGCTATAAGTGGCCAAGTTACAAGCAAACTATGTGGAGCCACATTGTGTTTGAGCACCCTGCTACTTTTGAAACAATGGCCTTGGAGCCTGAGAAGAAAAAGGAGATCATTGAGGATTTGATCACTTTCAGCAAGAGCAAGGATTTCTATGCAAGGATTGGGAAGGCATGGAAAAGGGGTTACCTTCTTCATGGCCCTCCTGGGACAGGCAAGTCCACTATGATTGCTGCAATGGCCAATCTGTTGGCCTATGATGTCTATGACTTGGAGCTCACTGCAGTGAAGGACAACACAGAGTTGAGGAAGCTTCTGATTGAGACAACCAGTAAGTCTATAATTGTTATTGAAGACATTGATTGCTCTCTTGATCTTACAGGACAGAGGAAGAATAAGGCAGATAAGTTGTCGGACGAGGAGACTGATAAGGATGTTGTTGGAAGGAAAGAGGGCAAGGAAGAAGGAGGGAGTGGCAGCAAAGTCACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCTTGTGGAGGGGAGAGGCTGATTGTGTTCACAACCAATTATGTGGAGAAACTTGATCCTGCACTCATTAGAAGGGGGAGAATGGACAAACACATTCAACTCTCCTATTGCACTTTTGATGGCTTTAAAGTGCTTGCAAATAATTACTTGAAGCTACAAACTCATCCATTGTTTGACACCATCAAGAGGCTAATAGAGGAGGCCAACATCACCCCAGCTGATGTTGCTGAAAACCTCATGCCCAAGTCCCCAATGGATGATCCTCACAAGTGCCTCTCCACCTTGATTCAAGCACTTGAGAAAGCTGCAAAAGCTGAGGAGCTGGAGCAGAATTGTCCCATTCAACATGAACAACTTCTTCAACAAAATGGCTCCATTAAGGAAAATGGTGAGCTTCCACCTGACAAAGCAGTGAATCAATGCCAGCTATGA 1509 0.448 MKMMSEMWTTMGSTLASFMFLWTIMRQYCPYGVQRFLEKYTHRIMNYFSPYIRISFHEYMGDRLKRSEAYAAVEAYLSANTSKSAKRLKAELGKDSSNLVLTMDEYERVTDEHKGVKVWWVSNKVMSPTRSSMSYYPEQERRFYKLTFHNKYRDLITESYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMALEPEKKKEIIEDLITFSKSKDFYARIGKAWKRGYLLHGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKNKADKLSDEETDKDVVGRKEGKEEGGSGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLQTHPLFDTIKRLIEEANITPADVAENLMPKSPMDDPHKCLSTLIQALEKAAKAEELEQNCPIQHEQLLQQNGSIKENGELPPDKAVNQCQL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1685 502 Pfam Domain associated at C-terminal with AAA 30 122 IPR025753 -
Vra7g1685 502 PANTHER BCS1 AAA-TYPE ATPASE 5 477 - -
Vra7g1685 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 443 IPR027417 -
Vra7g1685 502 Pfam ATPase family associated with various cellular activities (AAA) 247 394 IPR003959 GO:0005524|GO:0016887
Vra7g1685 502 PANTHER ATP BINDING PROTEIN 5 477 - -
Vra7g1685 502 MobiDBLite consensus disorder prediction 316 340 - -
Vra7g1685 502 CDD AAA 243 395 - -
Vra7g1685 502 Gene3D - 391 463 - -
Vra7g1685 502 Gene3D - 202 390 IPR027417 -
Vra7g1685 502 MobiDBLite consensus disorder prediction 316 342 - -
Vra7g1685 502 SMART AAA_5 242 397 IPR003593 -
Vra7g1685 502 ProSitePatterns AAA-protein family signature. 365 384 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1685 Vra-Chr7 35425090 35427348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1685 207 420 Miscellaneous Gene Families AT5G58870 27.477 5.80e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1685 - - gmx:100798176 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1685 7 35425090 35427348 Vra7g1685 7 35425090 35427348 ECH