Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1675 ATGGTTTCCGATTCAATCTCTGCCGTGCCGATTCCCTCCGCTGCAAACACTAAGAACCCCGGGAAGAAGAAGAGGACTAACAGGTCTGCAAAATTGAAGCAGTATAAAATCGATGCGCGCCGCGAACAGTGGCTTTCCCAAGGTGTGGTGAAGAGTAAGGGATGCAAGGACGGTGTGGACAATAGCGTCGTTCACGCGCCGCCGCCGTCGGTGAATCACGGCAAGCACTCCTTGGAGCCTCTTAACACGAGGCGCGAAGGCGAAGAAGACGACGGATTGATTCATCATGACAGCGATTCGGAGTCTCCTACCAACTGTCCTGCCGGCGTATTGTGCGGCAATGATTCGGGAACAAACTTCACCGGAAGCAGTAGTGGCGGGAGCAGCAGCAGCAGCAGTTCAAGCAGCGGCGGGTGCTGTTCCGGGAACATTACCGAGGAGGAAGAGGAGGAGGAAGAAGAAGGCGAGGACGAAGATGATGGTTGCTTGGATGATTGGGAGGCCATGGCAGATGCTTTAGCCGCCGATGACAAGCACGAAATTCCTTGTTCTGATTCACCCCCTGTTGTTTTGCCTCGTGAAGGATCCAATTTAGAGTCTCCGAATTCAAAACCCGAGAGTAGTAGATTGGTTCCTTGGGGCTCTGGTAGTAGCCGAGCGTGGAGGGCTGATGACGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCGAACCCTGATCGCCGCTGTGTTGGAGGGGTCCCCTGGGCTCGTGTCTCCACGCCTTCCTCGTGTCCTATTTGCTGTGAGGATCTGGATTTGACGGACACGAGTTTCTTGCCTTGTTTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTGGAGGAGGATGGGCGTTGTCCCGGGTGTAGGAAGCCTTATGAGTGTGAACCTGTTGAGACAGAGGCGAGTGTGCATGGAGGCAACCTCACTCTTCGGTTGGCACGTTCCTGCAGCATGATCGAGAGGTCTTGA 1017 0.5438 MVSDSISAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGVVKSKGCKDGVDNSVVHAPPPSVNHGKHSLEPLNTRREGEEDDGLIHHDSDSESPTNCPAGVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCCSGNITEEEEEEEEEGEDEDDGCLDDWEAMADALAADDKHEIPCSDSPPVVLPREGSNLESPNSKPESSRLVPWGSGSSRAWRADDAFRPQSLPNLSKQHSMPNPDRRCVGGVPWARVSTPSSCPICCEDLDLTDTSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVHGGNLTLRLARSCSMIERS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1675 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 320 IPR013083 -
Vra7g1675 338 MobiDBLite consensus disorder prediction 1 35 - -
Vra7g1675 338 MobiDBLite consensus disorder prediction 196 214 - -
Vra7g1675 338 Pfam RING/Ubox like zinc-binding domain 263 309 - -
Vra7g1675 338 MobiDBLite consensus disorder prediction 177 216 - -
Vra7g1675 338 MobiDBLite consensus disorder prediction 99 142 - -
Vra7g1675 338 MobiDBLite consensus disorder prediction 144 163 - -
Vra7g1675 338 MobiDBLite consensus disorder prediction 78 98 - -
Vra7g1675 338 MobiDBLite consensus disorder prediction 48 163 - -
Vra7g1675 338 CDD mRING-HC-C4C4_CNOT4 263 306 IPR039515 -
Vra7g1675 338 ProSiteProfiles Zinc finger RING-type profile. 263 305 IPR001841 -
Vra7g1675 338 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 336 IPR039780 GO:0004842|GO:0030014
Vra7g1675 338 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 336 - -
Vra7g1675 338 SUPERFAMILY RING/U-box 257 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1675 Vra-Chr7 35263686 35267251 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1675 - - var:108330419 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1675 7 35263686 35267251 Vra7g1675 7 35263686 35267251 ECH