Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1668 ATGGAACGCACGGCATCCTTCAGCGACACCAATAATAGTCTCTCTTCGCAACCAAGTCTCGCTTCAGTTCCATCCCTCAACTCACACTCACACCTCTTCAACGCTTCCAACACCTCTCACACGTGCCTCGCCACTCTCAAACCCCACACCTCCTCCTACACCTCCTCCCTCACCCTCGCCGGCAAGTTCCTCTACGCAGGCTCCTCCGACAGAGAAATCAGATCCTGGAACCACACCATTTTCCTCTCCGAACACCTACAAAACACCAACCTCGTAACCGCGGGAACGGGTGCCGTGAAATCCATAGTGGTCCACTCCAACAAGCTCTTCAGCGCGCACCAAGACCACAAAATCCGCGTCTGGAGAATCACCAGCCACGACCACGACCAACAGAAGTTCACACATGTGGCCACTCTCCCCACGCTCCGCGACCGCGTCACCAAAATCTTGATCCCGAAGAATCACGTTCAGATTCGGCGGCACAAGAAGTGCACCTGGGTTCACCACGTGGACACCGTGTCCTCCCTGGCCTTGTCCCACGACGGAAAGTTGTTGTACTCCGTTTCTTGGGACCGGACGTTGAAGGTCTGGCGGACGAAAGACTTCACGTGTTTGGAGTCGGTTCGCAACGCGCACGAGGACGCCATAAACGCTGTGGCAGTTTCTGAGGAGGGACAGGTGTACACTGGATCCGCCGACAAGAGAATAAGGGTTTGGAGAAAAAGGGAAGGGGAGAAGAAACACTGTGTGGTGGAGACGTTGGAGAAACACAGGTCAGGGATTAACGCTTTGGCTCTAAGCAGTGACGGTTGCGTGTTGTACTCTGGTGCATGTGATAGGTCCATACTGGTTTGGGAGAAGGGAGAGAATGGGAAATCTGCGGTGGTTGGTGCTCTGAGGGGGCACACTAAGTCCATTCTCTGCTTGTGTGTGGTTTGGGATTTGGTGTGTAGTGGTTCTGAGGATAAAACGGTGCGTATTTGGAGAGGGATTCAGAAGGAGTATTCCTGCTTAGCTGTTTTAGAAGGGCATATCAGTCCTATTAAGACCCTAACTGCAACCCTTCATCACACTCATCACCCTTCCCAACTATCTCTTCTTCTCTTTAGTGGCAGTTTGAACTCTGATATCAAAGTTTGGCAGCTTTTTCTTCCTCTTCTTTCCACCTAA 1170 0.5222 MERTASFSDTNNSLSSQPSLASVPSLNSHSHLFNASNTSHTCLATLKPHTSSYTSSLTLAGKFLYAGSSDREIRSWNHTIFLSEHLQNTNLVTAGTGAVKSIVVHSNKLFSAHQDHKIRVWRITSHDHDQQKFTHVATLPTLRDRVTKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSHDGKLLYSVSWDRTLKVWRTKDFTCLESVRNAHEDAINAVAVSEEGQVYTGSADKRIRVWRKREGEKKHCVVETLEKHRSGINALALSSDGCVLYSGACDRSILVWEKGENGKSAVVGALRGHTKSILCLCVVWDLVCSGSEDKTVRIWRGIQKEYSCLAVLEGHISPIKTLTATLHHTHHPSQLSLLLFSGSLNSDIKVWQLFLPLLST* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1668 389 SUPERFAMILY WD40 repeat-like 39 382 IPR036322 GO:0005515
Vra7g1668 389 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 389 IPR045182 -
Vra7g1668 389 Pfam WD domain, G-beta repeat 167 197 IPR001680 GO:0005515
Vra7g1668 389 Pfam WD domain, G-beta repeat 253 285 IPR001680 GO:0005515
Vra7g1668 389 Pfam WD domain, G-beta repeat 297 328 IPR001680 GO:0005515
Vra7g1668 389 Pfam WD domain, G-beta repeat 336 380 IPR001680 GO:0005515
Vra7g1668 389 Pfam WD domain, G-beta repeat 204 239 IPR001680 GO:0005515
Vra7g1668 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 249 IPR001680 GO:0005515
Vra7g1668 389 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 389 - -
Vra7g1668 389 Gene3D - 6 155 IPR015943 GO:0005515
Vra7g1668 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 328 IPR001680 GO:0005515
Vra7g1668 389 Gene3D - 156 384 IPR015943 GO:0005515
Vra7g1668 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 286 IPR001680 GO:0005515
Vra7g1668 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 286 - -
Vra7g1668 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 239 - -
Vra7g1668 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Vra7g1668 389 MobiDBLite consensus disorder prediction 1 22 - -
Vra7g1668 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 197 - -
Vra7g1668 389 SMART WD40_4 39 77 IPR001680 GO:0005515
Vra7g1668 389 SMART WD40_4 85 122 IPR001680 GO:0005515
Vra7g1668 389 SMART WD40_4 159 198 IPR001680 GO:0005515
Vra7g1668 389 SMART WD40_4 334 381 IPR001680 GO:0005515
Vra7g1668 389 SMART WD40_4 247 286 IPR001680 GO:0005515
Vra7g1668 389 SMART WD40_4 201 240 IPR001680 GO:0005515
Vra7g1668 389 SMART WD40_4 292 329 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1668 Vra-Chr7 35207115 35208802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1668 163 382 Acyl Lipid Metabolism Gene Families AT3G18860 23.276 3.04e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1668 - - gmx:100801906 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1668 7 35207115 35208802 Vra7g1668 7 35207115 35208802 ECH