Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1665 ATGTTTCATCCTCGTCATTACACAACATGTCTGCTTCTTCTTCTCTTCCTTCTCGCACTTTCCGACTTTTCCATGTCCCAATCACAATCCCCTTGGGCGGCCAAGAAAAAGCGCATGAAAGAGAAAGTTCGCAATATGTTTTACCACGCGTATGACAACTATATGACATATGCATTTCCGCATGACGAGCTTAAACCTATCTCTAAAACTTTCACCAACTCCCTGAGTGAGCTGGGAAATTTGAAGCTTGAACACTTGCCTCAAGACTATAATGGCTCTGCGCTTACACTTATTGAATCGCTGTCTAGCCTTGTTATTATGGGAAATAACACTGAATTTGAGAGGGCAGTGCTTTGGCTTTCAGAAAATCTGACATTTGATGTTGATGCACGCATAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTTGTCTCTGCTCATTTGCTTTTATCTGATTCTTCGAAGAAGTTGTTACAAGGGGCTTACAACAATCAGCTGCTAGTTCTGGCTGAAGATTTAGGGAAACGCTTCCTACCAGCATTTAATACGCCTACTGGATTGCCATATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCGCTGATTCTTGAAATGGGTGCTTTATCAAAAATGACTGGCGACCCCATATACGAATCAGTAGCTTTACGTGCTCTTCGCAAGCTGTGGAGTATGCAGAGCTCATTAAAACTATTTGGAACCACATTGGATGTGGCAACTGGGCAATGGATCGAATATTCATCAGGAATTGGAGCTGGGGTTGATTCCTTCTACGAGTATCTTCTCAAAGCCCATATCCTTTTTGGGAAGGAGGACTTTTGGAAGATGTTTCACTCTGCTTATGTTGCTGTGCAGAAATATTTCAGACACGGTGCTTGGTACCATGAAGCTGATATGAGGACTGGAAGAGCAACTTATTGGCAGCTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTATTGGGGATGTTATGGCTGCTAATTCCTCTCACCGTGAGTTCTTCCATGTGTGGAAGAGATATGGAGTGCTACCAGAGAGGTATTTGCTGGACCACCAGATGATTCATCCCACTGAAAAATATTATCCCTTACGTCCTGAATTGGCTGAGTCAACATTCTACTTATATCAAGCTACTAAAGGTCATCCTCTTCCGGTACTAAGTAATTGGCATGAAGAGCTTCCAGAAGCTTATGTTCCAACCAATTGGACTTTTGTGAAGAGGCAACCTAGAGTGAGTCGAATCAGCTCAATGTCTCTGCAAGTGTGTCCTGCTTTGAATTTAAAGTCAGGTCAACATATTGAGAGTGCTTGCCACATCCCTGATGCTCGTAGTGACTTCAGGTGTTTGACAGACGAAGATTGTGGAGTTGATGCCACTACATGCAGAAGAAGATCATGCAGTATGGCTGGGTTTTGTGGGTTATGGCTCTTCAGATGA 1509 0.4301 MFHPRHYTTCLLLLLFLLALSDFSMSQSQSPWAAKKKRMKEKVRNMFYHAYDNYMTYAFPHDELKPISKTFTNSLSELGNLKLEHLPQDYNGSALTLIESLSSLVIMGNNTEFERAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLLSDSSKKLLQGAYNNQLLVLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKMTGDPIYESVALRALRKLWSMQSSLKLFGTTLDVATGQWIEYSSGIGAGVDSFYEYLLKAHILFGKEDFWKMFHSAYVAVQKYFRHGAWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDVMAANSSHREFFHVWKRYGVLPERYLLDHQMIHPTEKYYPLRPELAESTFYLYQATKGHPLPVLSNWHEELPEAYVPTNWTFVKRQPRVSRISSMSLQVCPALNLKSGQHIESACHIPDARSDFRCLTDEDCGVDATTCRRRSCSMAGFCGLWLFR* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1665 502 Pfam Glycosyl hydrolase family 47 46 403 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vra7g1665 502 Gene3D - 28 422 IPR012341 GO:0005975
Vra7g1665 502 PANTHER ALPHA-MANNOSIDASE I MNS5 17 403 - -
Vra7g1665 502 PANTHER ALPHA-MANNOSIDASE I MNS5 402 501 - -
Vra7g1665 502 PRINTS Glycosyl hydrolase family 47 signature 46 66 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vra7g1665 502 PRINTS Glycosyl hydrolase family 47 signature 131 149 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vra7g1665 502 PRINTS Glycosyl hydrolase family 47 signature 181 200 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vra7g1665 502 PRINTS Glycosyl hydrolase family 47 signature 272 289 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vra7g1665 502 PRINTS Glycosyl hydrolase family 47 signature 329 345 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vra7g1665 502 PRINTS Glycosyl hydrolase family 47 signature 386 410 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vra7g1665 502 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 17 403 IPR044674 GO:0004571|GO:1904380|GO:1904382
Vra7g1665 502 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 402 501 IPR044674 GO:0004571|GO:1904380|GO:1904382
Vra7g1665 502 SUPERFAMILY Seven-hairpin glycosidases 37 404 IPR036026 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1665 Vra-Chr7 35164333 35172946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1665 401 499 Glycoside Hydrolase AT1G27520 51.961 1.88e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1665 K10084 - gmx:100793674 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1665 7 35164333 35172946 Vra7g1665 7 35164333 35172946 ECH