Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1653 ATGGGAACGACAACAACTCCTCTTTCGCACACAGTTAGCGTCTTCAACATTCCTCGCTCCGCCACCGCTAAGGACCTTCTCCACTTCCTCGAATCCAAGGTGGGTACTTCCACCGTCTTCGCCCTCGAAATCTTCTCCGACAACGCCAACTGGAAGTCTCGCGGCGCCGGTCGCGTTCAGTTCGAGACCCTCGACGCTAAGTCCCGCGCCCTATCTCTCTCCAACCTTCAACAACTGCTCATCCACTCCCACTTCCTCCGCCTCTCCGATACCTCCGAAGACATCATCTTCCGCCCCCTCCACCGCCTTCAAAATGGTGTCCTCTACGCCGGCATCATGCTCTCCGACCACCGCATGAGCGTTCTCGGCTCCTGGGAAGGCGTTGCGGGGTTGGTAGTGCCCCAAAGGAGGAAGCTTGACTTCTTGGTGTGGCATGATGACGACTGTTACCGACTCGAGATTTTTTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGAGAAGAAGCCAAACTCAATGCCATTCTCTTGAAGCTTAAATTTGGGCCAAGGATTTATAAGAAAAAGACGGGGCCAGATGTGGCAACCACGTTTAAGAGTGATAGGTACCATTTTTGTAAGGAGGATTCTGAGTTTCTTTGGGTGCGGACAACTGACTTTTCGGCTCTGAAGTCAATTGGGCACTCGACTTCGTTTTGTTGGGAAATTGAGGAAGAACATTTGGCTTCGGATGTTTTTACAAGTTTCCCGCTCTACAAGGAAAATATGACAGATTTGGCTCTGGAGGATGGGGAAGAATTCTGTTCTTCCACTGAAGCAGTTCCTCTTGTAAAGTGTGCTTTGCAATCTAAGTTACCTTACGAGGCCCTTTTCCAGTTGAATTCTCTTGTTCATACTCAGAAAATTTGTCTTGCTTCGGTGGATGATGAATTGATTGACCTTTTGGGAGGCTTAGATGAAGAAATTAGAGCTGTGATTTTTCAGAAATTGCACCAGATGAGCTTCCCTTGCTACGAGCCTCTTAAATTCGTGAAGACTCAGTTGCATGTGCTGAGTAATAAGAAAAAAAGTCCACCACAATCTTCACAGAAAAGATTGACAGATAATAACATTATGAGCTGTCATAGAGCCTTGATTACCCCAACGAAAATTTATTGCCTTGGTCCTGAGCTTGAAACTTCAAACCATGTGGTAAAGCACTTTGCCTCCTATGCTTCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAAATTATGCGGTATCGACTGGTGTGCAAAAGGGAATATTTTCAAAGCCTTCTAAAACTGAAATATATAATCGAATATTGACTATTCTTCGAGATGGGATTGTTATTGGATCAAAGAGATTTGAGTTTCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATTTGAAAGCAACAGATATCAGAGAATGGATGGGATGCTTCAACAATATCCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGTCCCCTCAAGATGTTGAGATAATTCCAGATATTGAAGTTACCACTGATGGTGTAAGCTACTGTTTCTCAGATGGTATCGGAAAAATTTCCCAATCTTTTGCTAGGCAAGTTGCTCAAAAGCTCAAGTTAGATCATAGTCCTTCAGCATTTCAAATTCGGTTTGGAGGATTTAAAGGCGTCATTACTGTTGATCGCCATTCCTTTAGGAAGTTATCATTGCGCAAAAGCATGCTGAAGTTTGAATCTAAAAATAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGACTACATTAGGAGTAAAGGACGAAGTGTTTTTGGCAAGGCAACAGGACCAATTGAATTTGTTGGGAAGGATGTTGACTGATAGTAAGGCAGCTTTGGATGTTTTGGAAAGTTTGAACGGAGCTGATTCAAGGAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCCTACCTATCTATGATGCTTAAGGCTTACTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTAGTAGGTTGCTTGGATGAAACTGGTATCTTGAATTATGGTCAAGTATTTGTTCGTGTAACGGTGAAAAAAACTACGGAAAACTTTGATGACAACTTAAGGAAAGTGGATGACGATGATAGCACACGTATAGTAGTGGGAAAGGTGGTAGTCACGAAAAATCCTTGTCTTCACCCTGGAGACGTAAGAGTCCTTGATGCTATCTACAATGAAGAGTTAGAGGAAAAGGGTTTGAGGGATTGCCTTGTATTTCCACAAAACGGACATAGGCCCCATCCAAATGAATGCTCTGGAGGTGATCTCGATGGAGATTTGTTTTTCATAAGCTGGGACGAAGATCTAATACCATGTCAAATCGAGGCTCCAATGGACTACACAGGACGTAGACCTCGTATAATGGATCATAAGGTGACCCTAGAGGAAATCCAACAATTTTTCGTGGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCCCATCTAGTTCACGCTGACCGAGAACCAGATAAGGCCAAGAGTAGAAAATGTCTGGAGTTAGCAGAGCTTCACTCCATGGCTGTTGATTTTGCAAAGACCGGAGCACCTGCTGCAATGCCAAGAGTTTTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGGCGGACAAGCCTATGTACATCTCCAAGGGGGTACTGGGAAAACTTTATCGTGCTATAATTGAGTCTCAACTGCAAATAAAATATAGTTTTGTTTGGTCACAAAAGCTTGCTGAAGAAGCATATGATCGTAGCTTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCCTCAAGTAAAAAAGAAATGTACGCAGATAAGATGAGCAGTTTGATGAACTTCTACGGTGCCGAGACTGAGGATGAAATGCTAATTGGTAACTTGCAAAACCGTGCCTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAAGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGTGCGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCGCACGAATATCGTCCTATGGCTTCTGCATGGTATCATGTGACCTATCACCCCAGCTATTATTGCCAGGAAAGATCGTGTTTTCTTAGCTTCCCATGGATAGTTGGTGAGATTTTGTTGCAGATAAGGTCTGTAAATAAAGCAGTTCAAGGATGA 3360 0.4321 MGTTTTPLSHTVSVFNIPRSATAKDLLHFLESKVGTSTVFALEIFSDNANWKSRGAGRVQFETLDAKSRALSLSNLQQLLIHSHFLRLSDTSEDIIFRPLHRLQNGVLYAGIMLSDHRMSVLGSWEGVAGLVVPQRRKLDFLVWHDDDCYRLEIFFEDILESHGYCLGEEAKLNAILLKLKFGPRIYKKKTGPDVATTFKSDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIEEEHLASDVFTSFPLYKENMTDLALEDGEEFCSSTEAVPLVKCALQSKLPYEALFQLNSLVHTQKICLASVDDELIDLLGGLDEEIRAVIFQKLHQMSFPCYEPLKFVKTQLHVLSNKKKSPPQSSQKRLTDNNIMSCHRALITPTKIYCLGPELETSNHVVKHFASYASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPSKTEIYNRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKATDIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVSPQDVEIIPDIEVTTDGVSYCFSDGIGKISQSFARQVAQKLKLDHSPSAFQIRFGGFKGVITVDRHSFRKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVFLARQQDQLNLLGRMLTDSKAALDVLESLNGADSRSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGILNYGQVFVRVTVKKTTENFDDNLRKVDDDDSTRIVVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLRDCLVFPQNGHRPHPNECSGGDLDGDLFFISWDEDLIPCQIEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERADKPMYISKGVLGKLYRAIIESQLQIKYSFVWSQKLAEEAYDRSFEVNGFEAFLETASSKKEMYADKMSSLMNFYGAETEDEMLIGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQCEAKEWFETSCQPHEYRPMASAWYHVTYHPSYYCQERSCFLSFPWIVGEILLQIRSVNKAVQG* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1653 1119 Pfam RNA dependent RNA polymerase 380 958 IPR007855 GO:0003968
Vra7g1653 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1116 IPR007855 GO:0003968
Vra7g1653 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 7 1116 - -
Vra7g1653 1119 SUPERFAMILY RNA-binding domain, RBD 7 77 IPR035979 GO:0003676
Vra7g1653 1119 Gene3D - 2 84 IPR012677 -
Vra7g1653 1119 CDD RRM_SF 12 70 - -
Vra7g1653 1119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1653 Vra-Chr7 35037348 35041890 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1653 K11699 - gmx:100808274 1987.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1653 7 35037348 35041890 Vra7g1653 7 35037348 35041890 ECH