Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1614 ATGAACAATTCCGCAAAGCTCCAACAACGGTGCGTGGCTTCCCTTAGAACCCTAACACCCCACATTACCTGTCTCGCGGTCCACCGTAACCTCCTCTACGCCGCCTCCCTAAACCTCATCAACGTCTTCGACCTCTCCCATTACTCCCACATCGACGCCTTCAACCAAAGCCCTGCCTCAGGCTTTGTCAAGTCCATCGCCTTCACCAACTCAAGGGTTTTCACCGCTCACCAAGACCGCAAGATACGCGTCTGGCTCATCACTCCCTCTAAACGACATCGTCTCCTCTCCTCCCTCCCCACCGTTACCGACCGTCTCCGCCGTTGCATCGTTCCCCGAAACTACGTCAGCGTGCGCCGCCACAAGTCCAGGCTCTGGATCCAGCATTGCGACACTGTCTCCGGTTTAGCCGTGAACCAGAGGCTCATGTATTCGGCTTCGTGGGATAAGAGCTTTAAGGTCTGGGACTTGTTCAGTTTCCGGTGTTTGGAGTCCGTCAAAGCGCATGAGGACGCGATCAACGCTCTGGTTGTTAACCGAGATGGTATCGTATACACCGCGTCCGCGGATGGGAGCATCAAGGTTTGGAGAAGAGACTGCGAGGGGAAACGGCACGTGTTGGTGAGCACCATTGGAAGGCAGAAGTCGACGGTGAATGCACTTGCGTTGGACGGAGGGGGCGCGGGGTTGTTTTCCGGCGGTTGCGACGGCGAGATATGCCGGTGGGAGTGGGGGTGCGAGGAAAACGGCGCGGTGAAGATGGAGACGTTAAGGGGTCACAGTGGAGCCATACTATGTCTTATCCACGTGGCGGGTTTGTTGGCGAGTGCGTCCGCTGATCTAACGGTTAGGATCTGGCAACGGGAGAGAGGGAGGAGTGGGTATAGTTGCAGGGCGGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCCTTTCCGGGAGGTGACGATGACTCAAACGGCGTCGTTAGGCTATTTAGTGGAAGCCTAGACGGGGAGATTAAGTTTTCTCTCGTGTCATTTTATTTCCCTCCAAATCCAAAGGCGTGTTTGGTGAAGGCTGTGGCGGTGATCGGAATAGCACAGAAGGATCTCATTCATTCCATTTTGAAGCGCTTTTGGACACTGCGAGCCCTTGAGCGGGAAAACGTTGAACCTAACGACGCTCCGGATTCCGAGGTAGGAGTTGGAACATCCAAGAAGAGTCGCACAACTTCTGCTAATGGCAATACTCTGAAGCTTACCTGTGAACTTCTCCGGCTTTTTATCACAGAGGCTGTTCAACGTGCTGCTGCTGTTGCAGAAGCGGAGGGTGCTAGTGAAATAGAGCCAACTCATCTTGAGATTATTCTTCCTCAGTTGCTATTGGATTTCTAA 1383 0.5401 MNNSAKLQQRCVASLRTLTPHITCLAVHRNLLYAASLNLINVFDLSHYSHIDAFNQSPASGFVKSIAFTNSRVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCIVPRNYVSVRRHKSRLWIQHCDTVSGLAVNQRLMYSASWDKSFKVWDLFSFRCLESVKAHEDAINALVVNRDGIVYTASADGSIKVWRRDCEGKRHVLVSTIGRQKSTVNALALDGGGAGLFSGGCDGEICRWEWGCEENGAVKMETLRGHSGAILCLIHVAGLLASASADLTVRIWQRERGRSGYSCRAVLEGHEKPVKSLVAFPGGDDDSNGVVRLFSGSLDGEIKFSLVSFYFPPNPKACLVKAVAVIGIAQKDLIHSILKRFWTLRALERENVEPNDAPDSEVGVGTSKKSRTTSANGNTLKLTCELLRLFITEAVQRAAAVAEAEGASEIEPTHLEIILPQLLLDF* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1614 460 Gene3D - 4 111 IPR015943 GO:0005515
Vra7g1614 460 Gene3D - 112 344 IPR015943 GO:0005515
Vra7g1614 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 196 IPR001680 GO:0005515
Vra7g1614 460 MobiDBLite consensus disorder prediction 387 409 - -
Vra7g1614 460 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Vra7g1614 460 PRINTS G protein beta WD-40 repeat signature 184 198 IPR020472 -
Vra7g1614 460 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Vra7g1614 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 196 - -
Vra7g1614 460 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 338 IPR045182 -
Vra7g1614 460 SUPERFAMILY WD40 repeat-like 10 337 IPR036322 GO:0005515
Vra7g1614 460 Gene3D - 419 460 - -
Vra7g1614 460 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 6 338 - -
Vra7g1614 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Vra7g1614 460 Pfam CENP-S associating Centromere protein X 404 460 IPR018552 GO:0006281|GO:0051382
Vra7g1614 460 SMART WD40_4 120 156 IPR001680 GO:0005515
Vra7g1614 460 SMART WD40_4 294 340 IPR001680 GO:0005515
Vra7g1614 460 SMART WD40_4 8 44 IPR001680 GO:0005515
Vra7g1614 460 SMART WD40_4 204 243 IPR001680 GO:0005515
Vra7g1614 460 SMART WD40_4 47 86 IPR001680 GO:0005515
Vra7g1614 460 SMART WD40_4 250 287 IPR001680 GO:0005515
Vra7g1614 460 SMART WD40_4 159 197 IPR001680 GO:0005515
Vra7g1614 460 Pfam WD domain, G-beta repeat 255 286 IPR001680 GO:0005515
Vra7g1614 460 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1614 Vra-Chr7 34581801 34591066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1614 158 338 Acyl Lipid Metabolism Gene Families AT3G18860 26.738 3.60e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1614 - - gmx:100811392 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1614 7 34581801 34591066 Vra7g1614 7 34581801 34591066 ECH