Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1567 ATGGCTTCCTCGGAGATCGAGGTGGTATCGTCATCATCGTCGGTCTCCAAACCCAACGACCAGCCTCTTATCCTCGACGTCTTCACCGCCTCTGCTCACGGCGACTTCAACAAACTGAAAACCTTTGTCGAACAACACGGTGCCTCCGTCTCGGTTCCCGATGTTAGTGGCTATTACGCTCTTCAATGGGCCTCGCTTAACAACTTTCATGACATTGCGCACTATCTCATTCAGCATGGAGCAGATGTGAATGCTAAAGACAGCATGCAACAAACAGCATTGCATTGGGCAGCAGTTCGTGGTTCAACTGCAGCTGCTGATGTGCTTGTGGAGAATGGTGCTCAGATTGGAGCTGCTGACATAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGTCAGACATCTTTCTTAAATCACATTGTAGTAAAGTACCATGCCGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCACTGGGCCGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCATGCCAAGGAAGACAAGATAAAGATGGCTGTACACCATTGCACTGGGCTGCATTAAGAGGACATGCAGAGGCATGCGCTGTGCTTGTACATGCAGGCACAAAGGAAGAACTGATGGTGAAGGACAATGCTGGACACACCCCTGTACAACTTGCATATGATAAAGGTCATCGACATGTCGCTCCTTTCCTTTCAAATCAACAACGGGCTCATAGCAACAACTGGAAAGGGAAAGTTTGCCGTGGGGTGGTGACAGATATTGGTTATGCTCCCATCTTATTGTGTATTATGATCTTTCTCCTGATCCTCTTCATCAACTCAGTTATCGCAGCTCCTAACCTTGGAAAGATTACTGCTACTGCTGGACTTTGGGCATGGACAGCACTTTCCCTAGAAGCTGCTGCCCTGATTATGTTTTATAGGTGTAGTAGCAAAGATCCTGGTTATATAAAACGGCTGGGAGACTTGGGTACTCAAAGTGATACTGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGACAGGAAATTGGTCTCAACTGTGCCCTACCTGCAAGATAATAAGACCTGTACGATCTAAGCATTGCCCTACTTGTAAGCGATGTGTGGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTAATCTGTCTGGGAACTTTGACTTCTTCCGTTTCTGCTGCCGTTGCAGTTCAAAGGATTTGGACATCTACACCAACACTACTGGCAGGAGAAACATGGATCCATTATATGTTAGTACAACATCCAGGTTTAGTTGTGTTTTTGGTGATGGACGCAGTTGTTTTCATTGCAGCTACAACATTAACAATAACGCAGACTTCCATGATTGCTCGAAATGTGACCACAAATGAAGTAGCAAATTCTTCCCGCTATGATTATCTTCGTGGACCTGATGGGCGATTCAGAAACCCATATAACCATGGTTGTTGGAAGAATTGTGCCGACTTCCTTTCTCTGGGATATACAAATGATGATGAAATTGCTTGGCCTCGATTACAGCAGGTGGCAACTTGA 1623 0.4479 MASSEIEVVSSSSSVSKPNDQPLILDVFTASAHGDFNKLKTFVEQHGASVSVPDVSGYYALQWASLNNFHDIAHYLIQHGADVNAKDSMQQTALHWAAVRGSTAAADVLVENGAQIGAADINGYRAVHVAAQYGQTSFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDACQGRQDKDGCTPLHWAALRGHAEACAVLVHAGTKEELMVKDNAGHTPVQLAYDKGHRHVAPFLSNQQRAHSNNWKGKVCRGVVTDIGYAPILLCIMIFLLILFINSVIAAPNLGKITATAGLWAWTALSLEAAALIMFYRCSSKDPGYIKRLGDLGTQSDTEDPLLNIDLNSSSVWTGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFILICLGTLTSSVSAAVAVQRIWTSTPTLLAGETWIHYMLVQHPGLVVFLVMDAVVFIAATTLTITQTSMIARNVTTNEVANSSRYDYLRGPDGRFRNPYNHGCWKNCADFLSLGYTNDDEIAWPRLQQVAT* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1567 540 Gene3D - 143 259 IPR036770 -
Vra7g1567 540 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Vra7g1567 540 ProSiteProfiles Ankyrin repeat region circular profile. 156 177 - -
Vra7g1567 540 Gene3D - 4 142 IPR036770 -
Vra7g1567 540 ProSiteProfiles DHHC domain profile. 363 413 - -
Vra7g1567 540 Pfam Ankyrin repeat 57 87 IPR002110 GO:0005515
Vra7g1567 540 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Vra7g1567 540 ProSiteProfiles Ankyrin repeat profile. 122 155 IPR002110 GO:0005515
Vra7g1567 540 Pfam DHHC palmitoyltransferase 363 490 IPR001594 GO:0016409
Vra7g1567 540 SUPERFAMILY Ankyrin repeat 28 246 IPR036770 -
Vra7g1567 540 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
Vra7g1567 540 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
Vra7g1567 540 ProSiteProfiles Ankyrin repeat region circular profile. 56 87 - -
Vra7g1567 540 SMART ANK_2a 156 185 IPR002110 GO:0005515
Vra7g1567 540 SMART ANK_2a 56 85 IPR002110 GO:0005515
Vra7g1567 540 SMART ANK_2a 89 118 IPR002110 GO:0005515
Vra7g1567 540 SMART ANK_2a 122 152 IPR002110 GO:0005515
Vra7g1567 540 SMART ANK_2a 189 218 IPR002110 GO:0005515
Vra7g1567 540 SMART ANK_2a 224 253 IPR002110 GO:0005515
Vra7g1567 540 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Vra7g1567 540 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515
Vra7g1567 540 PANTHER - 3 530 - -
Vra7g1567 540 Pfam Ankyrin repeats (3 copies) 128 213 IPR002110 GO:0005515
Vra7g1567 540 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1567 Vra-Chr7 33933147 33946667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1567 7 237 Miscellaneous Gene Families AT1G05640 26.749 7.09e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1567 K20032 - gmx:100807263 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1567 7 33933147 33946667 Vra7g1567 7 33933147 33946667 ECH