Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1494 ATGATGAAGGGTGGTGAATACGAGCGGGTGCTGAGGTACTTGGACGAGGACGGTGATGGAAAGGTTTCAGCTTGTGAGTTGAGGAACAGAATAGGGATGATGGGTGGGGAGGTTGGGTTGAGAGAGGCGGAGATGGTGATTGCGGCGTTGGATTCTGACGGTGATGGGTTTCTTTGTTTGGAGGATTTGGTGAAGATGATGGAAGGAGTTGAAGAGGAAGAGAAGGTGAAGGATTTGAGGGAAGCTTTTGATTTGTACGACAGGGAACGCTGTGGCTTCATCACCCCCAAAGCCTTGAAGAGGATGCTCAACAAGTTGGGTGAATCCAAGTCCATGGATCAGTGCAGAGCCATGATTTCTCGCTTTGATTTGAATGGAGATGGCATGCTTAGCTTTGAAGAGTTCAGAGTTATGATGAACTAA 423 0.4799 MMKGGEYERVLRYLDEDGDGKVSACELRNRIGMMGGEVGLREAEMVIAALDSDGDGFLCLEDLVKMMEGVEEEEKVKDLREAFDLYDRERCGFITPKALKRMLNKLGESKSMDQCRAMISRFDLNGDGMLSFEEFRVMMN* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1494 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Vra7g1494 140 CDD EFh 78 139 IPR002048 GO:0005509
Vra7g1494 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Vra7g1494 140 Gene3D - 72 140 - -
Vra7g1494 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Vra7g1494 140 Pfam EF-hand domain pair 78 139 IPR002048 GO:0005509
Vra7g1494 140 Gene3D - 2 71 - -
Vra7g1494 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Vra7g1494 140 SMART efh_1 114 140 IPR002048 GO:0005509
Vra7g1494 140 SMART efh_1 78 106 IPR002048 GO:0005509
Vra7g1494 140 SMART efh_1 6 34 IPR002048 GO:0005509
Vra7g1494 140 SMART efh_1 42 70 IPR002048 GO:0005509
Vra7g1494 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Vra7g1494 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Vra7g1494 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Vra7g1494 140 SUPERFAMILY EF-hand 6 139 IPR011992 -
Vra7g1494 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Vra7g1494 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Vra7g1494 140 CDD EFh 6 64 IPR002048 GO:0005509
Vra7g1494 140 Pfam EF hand 48 67 IPR002048 GO:0005509
Vra7g1494 140 Pfam EF hand 10 29 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1494 5 139 EF-hand Containing Proteins AT5G42380 45.255 6.58e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1494 K13448 - gmx:100798531 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1494 7 32254204 32254959 Vra7g1494 7 32254204 32254959 ECH