Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1384 ATGACTCCCACTATGTTCTTGTCGTTGCTTTTCTTCATCATACTATCTATTTCACATCCCTCCTTCCAAATGCTACTCTTGCCACTTACACACACTCTTTCCCAAGCTCAATTCAACACCACTCACCACCTCTTGAAATCCACCTCCGCCCGTTCCGCCGCCCGCTTCCGCCGCCAACTCTCCCTCCCACTCTCACCTGGCAGTGACTACACCCTCTCCTTCAACCTGGGCCACCAGGCCCAGCCCATAACCCTTTACATGGACACAGGCAGTGACTTGGTATGGCTCCCCTGCGCCCCTTTCAAATGCATTCTCTGCGAGGGAAAGCCCAACGCCTCTCCGCCAGCCAACATCACTCGAAGCGTAGCCGTTTCGTGCAAGTCTCTCGCATGTTCCGCAGCGCATAACTTAGCCCCCTCTTCCGATCTCTGCGCAATGGCCCGTTGCCCTCTGGAATCGATTGAAACCTCCGAGTGTGCCAATTTCAAGTGTCCACCGTTTTACTACGCTTATGGCGACGGAAGCTTAGTCGCGCGTCTATATCGTGACTCCCTCTCTCTCTCTTCTCTGTCTCTTAGAAACTTCACCTTCGGTTGCGCTCATACAGCTCTCGCTGAACCTACCGGAGTCGCCGGATTCGGCCGCGGTTTGCTCTCTCTCCCGGCGCAGCTAGCCACTCTGTCTCCTCAACTTGGAAACCGCTTTTCGTACTGCCTTGTTTCTCACTCGTTTGACTCTGAGCGAGTTCAAAAATCGAGTCCGCTCATTCTCGGTCGTTACGAGGAGAAGGAAAAGGAGAAGATCAGTGGCGGTGGAATGGTTGAGTTTGCGTACACGCCTATGCTTGAAAACCCTAAGCATCCTTACTTTTATCTCGTTAGCTTAATCGGAATCTCTGTAGGGAAAAGGAATATTCCCGCACCGGAGATGCTGCAGCGGGTGAACCATCGAGGAGACGGTGGAGTTGTTGTGGATTCCGGCACGACGTTCACGATGTTGCCGGAGGCGTTTTACAACTCTGTCGTTGACGAGTTTGACCGCCGAGTCGGGCGAGTCAACCAGCGCGCGCGTAAGATTGAGGAGAAAACTGGACTCGCGCCGTGCTATTATTTGAACGCGGTGGCGGAAGTTCCTGTTATGACGCTGCGTTTTGCTGGAGGGAATTCCAGTGTGGTGCTGCCTAGGAAGAATTATTTTTACGAGTTTTTGGACGGCAGCGATGAGACAAAGGGAAAGAAGAGGGTGGGGTGTTTGATGTTGATGAACGGTGGAGATGAGCGTGAGCTGAGCGGTGGGCCGGGCGCCACACTCGGGAATTACCAGCAGCAAGGATTTGAGGTTGTGTATGACCTGGTAGAGAAGCGCGTGGGATTTGCCAAGAGGCATTGCGCGTCGCTCTGGGATAGACTGAATCGGGACAAGAACTAG 1428 0.5343 MTPTMFLSLLFFIILSISHPSFQMLLLPLTHTLSQAQFNTTHHLLKSTSARSAARFRRQLSLPLSPGSDYTLSFNLGHQAQPITLYMDTGSDLVWLPCAPFKCILCEGKPNASPPANITRSVAVSCKSLACSAAHNLAPSSDLCAMARCPLESIETSECANFKCPPFYYAYGDGSLVARLYRDSLSLSSLSLRNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPQLGNRFSYCLVSHSFDSERVQKSSPLILGRYEEKEKEKISGGGMVEFAYTPMLENPKHPYFYLVSLIGISVGKRNIPAPEMLQRVNHRGDGGVVVDSGTTFTMLPEAFYNSVVDEFDRRVGRVNQRARKIEEKTGLAPCYYLNAVAEVPVMTLRFAGGNSSVVLPRKNYFYEFLDGSDETKGKKRVGCLMLMNGGDERELSGGPGATLGNYQQQGFEVVYDLVEKRVGFAKRHCASLWDRLNRDKN* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1384 475 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 322 333 IPR001969 GO:0004190|GO:0006508
Vra7g1384 475 ProSiteProfiles Peptidase family A1 domain profile. 70 459 IPR033121 -
Vra7g1384 475 Gene3D Acid Proteases 48 257 IPR021109 -
Vra7g1384 475 Gene3D Acid Proteases 270 468 IPR021109 -
Vra7g1384 475 PANTHER BNAA01G17170D PROTEIN 3 468 - -
Vra7g1384 475 SUPERFAMILY Acid proteases 65 468 IPR021109 -
Vra7g1384 475 PANTHER OS07G0603500 PROTEIN-RELATED 3 468 - -
Vra7g1384 475 CDD pepsin_A_like_plant 70 463 IPR034161 -
Vra7g1384 475 Pfam Xylanase inhibitor C-terminal 291 459 IPR032799 -
Vra7g1384 475 Coils Coil 342 362 - -
Vra7g1384 475 Pfam Xylanase inhibitor N-terminal 70 258 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1384 Vra-Chr7 30954765 30956523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1384 36 466 Miscellaneous Gene Families AT1G77480 24.946 2.30e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1384 - - gmx:100805699 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1384 7 30954765 30956523 Vra7g1384 7 30954765 30956523 ECH