Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0870 ATGGCCTTCTATGCTGGTACCTTTGTTAAGCCAAACCATTCTTTCTCCCCAACCCACAAACCCAAAGCCCCAACTCCATACTATGATACCAGAAAAAAGTTCTGCGTGAGAGTTTCAGCCCCTGACTCGGGTGACGTCGAGAAGACTGCTATCAGGAAAGAGAAAGACGGCTGGAAGATCAATTACTCAGGAGAGAAACCTCAAACACCATTGTTGGACACAGTCAACCACCCAATTCACATGAAGAATCTGTCCACTCAGGATCTAGAGCAACTTGCAGCAGAGCTGAGGGCAGATATTGTCCACAGTGTCTCAAACACTGGTGGGCATCTTAGTTCAAGCTTGGGAGTGGTAGAGTTAGCAGTGGCTTTGCATCATGTTTTCGACACCCCTGAAGACAAAATTATATGGGATGTTGGTCATCAGGCATACCCACACAAGATTCTTACAGGTAGAAGGTCCAGGATGCACACCATTAGAAAGACTTCGGGGCTAGCAGGTTTTCCTAAAAGGGATGAGAGTACTCATGATGCTTTTGGAGTAGGACACAGTTCTACAAGCATATCTGCTGGTCTTGGCATGGCTGTTGCACGTGATCTACTGGGAAAGAAGAACAGCATCATATCAGTGATAGGGGATGGAGCATTGACAGCAGGCCAAGCTTATGAGGCCCTGAACAATGCTGGGTTCCTTGATTCTAACATGATAGTAGTACTTAATGACAACAAGCAAGTCTCTTTACCAACGGCCACACTTGATGGCCCCGCAAGTCCTGTCGGTGCCCTCAGCAGTGCTTTGAGCAAAATTCAAGCGAGTACAGAATTCCGCAAACTCAGAGAAGCTGCAAAAAGTATTACGAAACAAATTGGAGGACAAACACACCAGGTTGCAGCCAAAATGGATGAGTATGCGAGAGGCATGATCAGCGGTTCTGGATCTACATTATTTGAAGAACTTGGTTTATACTACATAGGTCCTGTAGATGGTCATAACATTAAAGATCTGGTCACCATCTTTGAAAAAGTTAAATCAATGCCTGCTCCAGGACCAGTTTTAATTCATATTGTAACAGAAAAAGGGAAGGGATACCCGCCAGCAGAAAAAGCAGCTGATAGAATGCACGGGGTTGTAAAGTTTGATCCAAAAACAGGAAAGCAGTTTAAGGCAAAATCCTCAACACTTTCATACACACAATACTTTGCTGAGTCTTTGATAAAAGAGGCTGAAATAGAGGATAAGGTAGTGGCCATTCACGCAGCAATGGGTGGTGGTACCGGCCTAAATTATTTCCACAAAAGATTTCCCGACCGCTGTTTTGATGTAGGGATAGCCGAACAACATGCTGTTACATTTGCTGCTGGGTTAGCTGCCGAAGGCCTCAAGCCTTTTTGTGCCATTTATTCGTCATTCCTGCAACGTGGATATGATCAGGTAGTCCATGATGTTGATCTTCAAAAGCTACCTGTTCGATTTGCCATGGATAGAGCTGGTTTGGTTGGAGCAGATGGACCAACGCATTGTGGAGCTTTTGATATCGCCTACATGGCTTGCCTGCCCAACATGGTGGTCATGGCTCCTTCCGATGAAGCTGAGCTGATGCACATGGTTGCAACAGCAGCAACTATAGATGACAGACCAAGCTGCTTCAGATTTCCTAGGGGAAATGGAATTGGAGCCACTTTACCACTCAACAACAAAGGAACCCCACTTGAGATCGGAAAAGGCAGAATTCTGATGGAAGGCAGCAGAGTTGCTATCTTGGGATATGGTTCTGTGGTTCAACAATGCAGACATGCCTCGGAATTGCTTAAAGAAGTAGGCGTTAATGTGACAGTTGCTGATGCTAGGTTTTGCAAACCTTTGGATACCGATCTCATCAGGCTACTGGCTAAAGAGCATGAAATACTGATCACGGTGGAAGAGGGTTCTATTGGTGGTTTTGGATCACATATTTCTCAATTCTTGAGCTTATCTGGTATTCTAGATGGACCTCTAAAGTGGAGAGCAATGATGCTTCCTGACAGGTACATTGATCATGGGTCACCCCAGGATCAGATTGAAGAAGCAGGGCTTTCATCAAAGCACATTGCGGCCACAGTCCTGTCTCTTCTTGAAAGACCAAAAGAAGTTCTTCTTTTCAAATAG 2145 0.4508 MAFYAGTFVKPNHSFSPTHKPKAPTPYYDTRKKFCVRVSAPDSGDVEKTAIRKEKDGWKINYSGEKPQTPLLDTVNHPIHMKNLSTQDLEQLAAELRADIVHSVSNTGGHLSSSLGVVELAVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESTHDAFGVGHSSTSISAGLGMAVARDLLGKKNSIISVIGDGALTAGQAYEALNNAGFLDSNMIVVLNDNKQVSLPTATLDGPASPVGALSSALSKIQASTEFRKLREAAKSITKQIGGQTHQVAAKMDEYARGMISGSGSTLFEELGLYYIGPVDGHNIKDLVTIFEKVKSMPAPGPVLIHIVTEKGKGYPPAEKAADRMHGVVKFDPKTGKQFKAKSSTLSYTQYFAESLIKEAEIEDKVVAIHAAMGGGTGLNYFHKRFPDRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDIAYMACLPNMVVMAPSDEAELMHMVATAATIDDRPSCFRFPRGNGIGATLPLNNKGTPLEIGKGRILMEGSRVAILGYGSVVQQCRHASELLKEVGVNVTVADARFCKPLDTDLIRLLAKEHEILITVEEGSIGGFGSHISQFLSLSGILDGPLKWRAMMLPDRYIDHGSPQDQIEEAGLSSKHIAATVLSLLERPKEVLLFK* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0870 714 Gene3D - 394 561 - -
Vra7g0870 714 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 714 - -
Vra7g0870 714 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 71 705 IPR005477 GO:0008661|GO:0016114
Vra7g0870 714 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 714 IPR005477 GO:0008661|GO:0016114
Vra7g0870 714 CDD TPP_DXS 108 363 IPR005477 GO:0008661|GO:0016114
Vra7g0870 714 CDD TPP_PYR_DXS_TK_like 400 553 - -
Vra7g0870 714 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 74 704 IPR005477 GO:0008661|GO:0016114
Vra7g0870 714 Pfam Transketolase, pyrimidine binding domain 394 555 IPR005475 -
Vra7g0870 714 Gene3D - 573 705 IPR009014 GO:0003824
Vra7g0870 714 ProSitePatterns Transketolase signature 2. 500 516 IPR020826 -
Vra7g0870 714 SMART Transket_pyr_3 394 559 IPR005475 -
Vra7g0870 714 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 72 357 IPR005477 GO:0008661|GO:0016114
Vra7g0870 714 SUPERFAMILY TK C-terminal domain-like 568 704 IPR009014 GO:0003824
Vra7g0870 714 ProSitePatterns Transketolase signature 1. 97 116 IPR005474 -
Vra7g0870 714 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 366 555 IPR029061 -
Vra7g0870 714 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 69 425 IPR029061 -
Vra7g0870 714 Pfam Transketolase, C-terminal domain 573 696 IPR033248 -
Vra7g0870 714 Gene3D - 64 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0870 Vra-Chr7 18641513 18645049 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0870 436 652 Acyl Lipid Metabolism Gene Families AT1G55510 22.026 2.61e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0870 K01662 - gmx:100799983 1312.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0870 7 18641513 18645049 Vra7g0870 7 18641513 18645049 ECH