Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1913 ATGGACACTCCCTTGCTAGAGAACACTGACAACCCTCACACTGTTGAGGAGAAGACACTGAAATTTTTTGTTAAGAGTTTTGGTTTTGAATCAAAGAAGCTATGGAGACTAGCAGGCCCTGCTATCCTCACCTGTATATGTCAGTACTCGCTCGGTGCACTCACTCAAACTTTTGCAGGCCAAGTTGGTGATCTTGCTCTTGCAGCAGTTTCTGTAGAAAATTCTGTCGTTGCAGGTCTTGCTTTTGGAGTCATGTTGGGAATGGGAAGTGCCTTGGAGACTCTGTGTGGGCAAACGTTTGGTGCAGGGCAGATGAGGATGTTGGGAGTGTACATGCAAAGATCATGGGTCATCTTGTTCACCACTGCACTTCTTATGTTACCTATTTATATTTGGTCACCTCCTATTTTAGTGCTGCTTGGAGAAACATCTCAGATCTCACATGCTGCAGGAAAGTTTGCTCTGTGGATGATACCTCAGTTATTTGCATATGCTATAAACTTTCCAATCCAAAAGTTTTTGCAGGCACAGGGGAAAGTGCTTGTCATATTATGGGTATCAGTGGGGGTTTTGGTGCTGCACATAGTTTTTAGCTGGCTTCTTATATTGAAGCTAGGCTGGGGTTTGATTGGAGCAGCTATCACTCTTAACACATCATGGTGGTTGATTGTCATTGCACAATTTCTCTACATTCTCATCACAAAGTCAGATGGAGCATGGACTGGATTCACATGGCTAGCATTTGTGGACTTGTTTGGTTTTATGAAGCTTTCTCTCGCTTCAGCTGTTATGCTATGCTTGGAGTTCTGGTATATGATGATACTGGTAGTGATAACAGGACGTTTGAAAAATCCTCTGGTACCTGTTGATGCCATATCTATCTGTATGAACATAAATGGCTGGGATGCCATGATTGCAATTGGGTTCAATGCTGCTATAAGTGTGAGAGTATCAAATGAACTTGGTGCTGGTGATTTCAAGGCTGCAAAGTTTTCAGTGTGGGTGGTTTCAATCACATCAGTGGCCATAGGTTTTGTGGTCATGATCGTAGTTCTATCAACAAAGGATTTTTTTCCCTACTTTTTTACCACCAGCTCTGCAGTTGCCCATGAAACAACTAAGCTTGCTACTTTGCTCGGTGTCACTGCAATTCTAAACAGCCTTCAGCCAGTCCTATCTGGTGTTGCTGTTGGAGCTGGTTGGCAATCTCTTGTAGCATACATCAACATTGGGTGCTATTATGTATTTGGATTACCAGCAGGAATAATCTTGGGATTTACACTTAATTTTGGAGTAGTGGGTATTTGGTCAGGGTTGATTGCAGGCATAGTTTTGCAGACCATAATCCTTATAGTAATCACTTCAATAACCAATTGGAAAAAAGAGGCTGAAGAAGCAGAGGGTCGTGTGAGAAAGTGGGGAGGATCAATTGCATATGATCAATGA 1446 0.4253 MDTPLLENTDNPHTVEEKTLKFFVKSFGFESKKLWRLAGPAILTCICQYSLGALTQTFAGQVGDLALAAVSVENSVVAGLAFGVMLGMGSALETLCGQTFGAGQMRMLGVYMQRSWVILFTTALLMLPIYIWSPPILVLLGETSQISHAAGKFALWMIPQLFAYAINFPIQKFLQAQGKVLVILWVSVGVLVLHIVFSWLLILKLGWGLIGAAITLNTSWWLIVIAQFLYILITKSDGAWTGFTWLAFVDLFGFMKLSLASAVMLCLEFWYMMILVVITGRLKNPLVPVDAISICMNINGWDAMIAIGFNAAISVRVSNELGAGDFKAAKFSVWVVSITSVAIGFVVMIVVLSTKDFFPYFFTTSSAVAHETTKLATLLGVTAILNSLQPVLSGVAVGAGWQSLVAYINIGCYYVFGLPAGIILGFTLNFGVVGIWSGLIAGIVLQTIILIVITSITNWKKEAEEAEGRVRKWGGSIAYDQ* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1913 481 Pfam MatE 261 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra6g1913 481 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra6g1913 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 467 - -
Vra6g1913 481 CDD MATE_eukaryotic 30 465 IPR045069 GO:0042910|GO:1990961
Vra6g1913 481 PANTHER PROTEIN DETOXIFICATION 33 16 467 - -
Vra6g1913 481 TIGRFAM matE: MATE efflux family protein 40 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1913 Vra-Chr6 35747740 35751530 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1913 K03327 - gmx:100811167 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1913 6 35747740 35751530 Vra6g1913 6 35747740 35751530 ECH