Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1897 ATGGCCCTCAATGACTTCTTCGCCGGAGAGATCGCGACGGAGCTTCTCAAAATGCTCATCAGCATCTCCCGGAAGTCGCTCCTCTGCCGCGCCAGTGCCGACCAACTCATCACCTACATCCACGAGCTCCTCCCCACCATCGAGGAGATAAAGTACTCCGGCGTCGAGCTCCCCGCCCTCCGCCAGTCCCAGCTCCACCGTCTCTCGGAGCTTCTCCGGTCCGGCGTCGAGCTCTCCCACAAGGTCCTGGCCTCCAGCCGCTGGAACGTTTACCGCAACCTCCACCTCGCCAAGAAGATGGACAAGCTCGAGAAGACCGTTTCGAAGTTCCTCCTCGGCCCCATGCAGGCCCACGTCATGGCCGACGTCCACCACACGCGCTTCGAGATGGCGGAGCGCTTCGACCGCGTTGACAACTCCGTCCGCCGCCTCGAGCAGTACTTCGGGAACATTAAGATTGGTGTCGGCGGCGGCGGCTGGGTTGAGGAGGCTGTCAGGAGCGTGGATGAGAATGTTGTTGACGGAAGCTCCGCCGTGGGGTTGGAATTCGGGAAGATTAAAGTAAGGGAGATGATTGTCGGGAGGGAGGATCTCTGGGTTGTCGGGATTTCTGGGATTGGCGGCTCCGGGAAGACCACTCTCGCTAGAGAGGTCTGCAAAGATGACCAAGTTAGACGTTATTTCAGAGAGAGGATTTTGTTCCTGACTGTGTCGCAGTCTCCAAACGTGGAGCAACTAAGAACGAAGATTTGGGGGTACATTATGGGAAATGAGAGATTGGATTCGAACTATGTGGTTCCACAGTGGGTGCCGCAGTTTGAGTGCAAAAGTGAAGCAGCTCGAACTCTGATTGTTTTGGATGATTTGTGGACATTCTCTGTGATGGAGCAGCTTGTGTGCAGAATACCTGGTTGCAAGTATCTTGTGGTGTCCAGAACTAAATTCCAAACGGTGTTGAATTATGAAGTGGAATTGCTGAGTGAAGAAGATGCCTTGTCTTTGTTCTGTCACCATGCTTTTGGACAGAAATCAATCCCTTTAGGTGCTAATGAGAATTTGGTGAAGCAGGTTGTTACTGAGTGTGGAAGGCTTCCTTTGGCTCTTAAGGTGATTGGAGCTTCTTTGCGAGATCAACCTGAGATGTTTTGGTTAAGTGTTAAAAACAGGTTATCTCAAGGTCAAAGCATTGGAGAATCCCACGAAATCAATCTGATTGAAAGAATGGCAATCAGTATCAATTACCTTCCAGAAAAAGTCAAGGAATGCTTCTTGGACCTGTGTTCATTTCCTGAGGATAAAAAGATCCCTTTGGATGTACTCATCAACATGTGGGTGGAAATCCATGATATTCCTGAAACAGAAGCTTATGCCATTGTTGTTGAACTCTCCAACAAAAATCTTCTCACCTTAATGAAAGAACCTCGTGCCGGAGGCATGTATAGCAGTTGCTTTGAGATATCAGTTACTCAGCATGATATACTACGAAACCTAGCCATTAATCTGAGCAACCGTGATAGCATTAATGAACGCCGGCGGTTAGTAATGCCAAAAAGAGAAAATGCAATTCCTAAAGAGTGGTTGAGATACAAGCACAAGCCATTTGAGGCTCAGATTGTTTCAATTCATACAGGTGAAATGAAAGATGTGGACTGGTGTAATATGGAATTTCCAAAGACAGAAGTTTTGATCATTAATTTCACATCCACTGAGTACTTCTTACCTCTCTTCATCAACAGAATGCCAAATTTGAGAGCACTGATAATAATAAACTACAGTGCAACATACGCTTGTCTTCACAACATTTCAGTTTTCAAGAACTTACCCAACTTGAGGAGCCTCTGGCTTGAAAAAGTTTCCACCCCAGAATTATCAGGCACTGTGTTGGAAAACTTGGGAAAACTATTTATTGTCCTCTGCAAGATCAACAACAGATTGGTTGAAAAAGAGGTAGATCTAGCCAAAGTCTTCCCAAACCTCTTTGACCTCACTCTTGATCATTGTGATGATCTAACCCAGTTGCCTACAAGCATCTGTGGAATGAACTCACTTCAAAACTTGAGTCTCACCAACTGCCACAATCTGACTCAATTACCTCTTGAACTGGGGAAACTAAAATCTCTAGAAATTCTTCGTTTATACGCTTGTCCTGATCTGAAAACACTGCCTAATAGCATATGTGAGATGATGAGATTGAAGTATATTGACATATCTCAATGTGTGAACCTGACATGCTTCCCTGAAGAGATTGGTAGACTGGTAAGCTTGGAGAAGATTGACATGAGGGAATGTTCCATGATCAGAAATGTACCAAAGTCTGCATTGTCATTGCAGTCTCTGCGACTTGTAATTTGTGACGAAGAGCTATCTGGGATTTGGAAAGAGGTTGAGAAGGCTAAGCCTAATGTGCTCATTCAAGTATCAGAGCAGCACTTTGACTTGGACTGGCTTAAAGAATGA 2457 0.4607 MALNDFFAGEIATELLKMLISISRKSLLCRASADQLITYIHELLPTIEEIKYSGVELPALRQSQLHRLSELLRSGVELSHKVLASSRWNVYRNLHLAKKMDKLEKTVSKFLLGPMQAHVMADVHHTRFEMAERFDRVDNSVRRLEQYFGNIKIGVGGGGWVEEAVRSVDENVVDGSSAVGLEFGKIKVREMIVGREDLWVVGISGIGGSGKTTLAREVCKDDQVRRYFRERILFLTVSQSPNVEQLRTKIWGYIMGNERLDSNYVVPQWVPQFECKSEAARTLIVLDDLWTFSVMEQLVCRIPGCKYLVVSRTKFQTVLNYEVELLSEEDALSLFCHHAFGQKSIPLGANENLVKQVVTECGRLPLALKVIGASLRDQPEMFWLSVKNRLSQGQSIGESHEINLIERMAISINYLPEKVKECFLDLCSFPEDKKIPLDVLINMWVEIHDIPETEAYAIVVELSNKNLLTLMKEPRAGGMYSSCFEISVTQHDILRNLAINLSNRDSINERRRLVMPKRENAIPKEWLRYKHKPFEAQIVSIHTGEMKDVDWCNMEFPKTEVLIINFTSTEYFLPLFINRMPNLRALIIINYSATYACLHNISVFKNLPNLRSLWLEKVSTPELSGTVLENLGKLFIVLCKINNRLVEKEVDLAKVFPNLFDLTLDHCDDLTQLPTSICGMNSLQNLSLTNCHNLTQLPLELGKLKSLEILRLYACPDLKTLPNSICEMMRLKYIDISQCVNLTCFPEEIGRLVSLEKIDMRECSMIRNVPKSALSLQSLRLVICDEELSGIWKEVEKAKPNVLIQVSEQHFDLDWLKE* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1897 818 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 9 135 IPR008808 -
Vra6g1897 818 Gene3D - 408 497 IPR036388 -
Vra6g1897 818 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Vra6g1897 818 Gene3D - 175 321 IPR027417 -
Vra6g1897 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 426 IPR027417 -
Vra6g1897 818 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 815 IPR044974 GO:0006952
Vra6g1897 818 Pfam NB-ARC domain 196 403 IPR002182 GO:0043531
Vra6g1897 818 Gene3D - 325 407 IPR042197 -
Vra6g1897 818 Gene3D Ribonuclease Inhibitor 530 801 IPR032675 -
Vra6g1897 818 PRINTS Disease resistance protein signature 200 215 - -
Vra6g1897 818 PRINTS Disease resistance protein signature 276 290 - -
Vra6g1897 818 PRINTS Disease resistance protein signature 361 375 - -
Vra6g1897 818 PRINTS Disease resistance protein signature 678 694 - -
Vra6g1897 818 PANTHER NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 3 815 - -
Vra6g1897 818 SUPERFAMILY L domain-like 560 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1897 Vra-Chr6 35567122 35570749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1897 609 795 Receptor kinase-like Gene Family AT5G27060 27.660 6.30e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1897 - - gmx:100776117 1454.88