Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1880 ATGGAAGCAACTCAAAAAAGTGACGATGGACACCTGATTACTGTGCTGAGTATCGATGGTGGTGGCATTCGGGGAATCATTCCAGGAGTTTTACTTGCTTTCCTTGAATCAGAACTTCAGAAGCTGGATGGTGCTGATGCAAGACTAGCAGATTACTTTGATGTGATCGCAGGAACAAGCACCGGTGGATTAGTCACTGCAATGCTCACTGCTCCAAATAAAGATAACCGACCCTTGTATGCAGCCCAAGATATTAAGAAGTTCTACCTTAAGCATTCCCCAAATATCTTCCCACATTCCTGGAATATATTCGCAACGGTGAGGAAGTTGGGAAGAACTCTGACTGGACCAAAGTACGACGGCAAGTATTTACACAAGCTCATCAGGGAAGAACTAGGGGACACAAAATTGGAACAAACATTAACCAATGTCGTTATCCCAGCATTTGACATCAAACACCTTCAACCCACCATCTTTTCCACATGCCAGGTGGAGAAGAGGCCAGAATTGAATGGGTTGTTGTCTGATATATGCATTTCAACTTCAGCAGCTCCAACCTATCTTCCTGCACATTACTTCGAAACCACAACCCCCGAAGATCGTGTGGAATTCGACCTTATAGATGGTGGTGTAGTAGCAAATAACCCGGCACTGGTGGGGATGGCAGAAGTTTCGAACAAAATCTTCACTGAACGTTTATATGAAAAATTCGATGTGAAACCGATGCAATACAGTAAGTTTTTGGTGATATCATTGGGAACAGGTTCTCAGCAACCTAAAAAGAAATACAGTGCTGCTGAGGCATCTTCATGGAACGCGTTGAACTGGGTTTCCTCCTCCGGTCGCAGTCCTATAATCGATGTCTTCACTGAAGCTAGTTCTGACATGGTTGATTTCCACATCTACTCCGTTTTCCTAGCACACAATGCTGAAGAAAACTACCTCCGAATCCAGGAAGATACTTTAACTGGGGAATTGTCTTCGGTTGACATTGCCACGGAGAAGAATTTGAATGGCCTCGTCCAAGTTGGGGAAGCATTGTTAAAGAAACCAGTTTCAAAGATTAACTTGAGGACTGGTATTCATGAACCTGTTAAGTCTGGCGAAACAAATGCAGAGGCCTTGAAGAGGTTTGCGGAACGACTATCCAAACAAAGGAGATTTCGTAAATCTCTAAAGTCTAAGTACGATGAGAAAATTTCAAAGAGGAAGGGATGA 1218 0.4343 MEATQKSDDGHLITVLSIDGGGIRGIIPGVLLAFLESELQKLDGADARLADYFDVIAGTSTGGLVTAMLTAPNKDNRPLYAAQDIKKFYLKHSPNIFPHSWNIFATVRKLGRTLTGPKYDGKYLHKLIREELGDTKLEQTLTNVVIPAFDIKHLQPTIFSTCQVEKRPELNGLLSDICISTSAAPTYLPAHYFETTTPEDRVEFDLIDGGVVANNPALVGMAEVSNKIFTERLYEKFDVKPMQYSKFLVISLGTGSQQPKKKYSAAEASSWNALNWVSSSGRSPIIDVFTEASSDMVDFHIYSVFLAHNAEENYLRIQEDTLTGELSSVDIATEKNLNGLVQVGEALLKKPVSKINLRTGIHEPVKSGETNAEALKRFAERLSKQRRFRKSLKSKYDEKISKRKG* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1880 405 Pfam Patatin-like phospholipase 16 219 IPR002641 GO:0006629
Vra6g1880 405 PANTHER PATATIN 4 392 - -
Vra6g1880 405 SUPERFAMILY FabD/lysophospholipase-like 13 370 IPR016035 -
Vra6g1880 405 Gene3D Cytosolic phospholipase A2 catalytic domain 2 395 - -
Vra6g1880 405 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 16 221 IPR002641 GO:0006629
Vra6g1880 405 PANTHER XYLOSE ISOMERASE 4 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1880 Vra-Chr6 35415976 35418171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1880 10 389 Miscellaneous Gene Families AT2G26560 59.055 6.54e-162 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1880 - - gmx:100799835 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1880 6 35415976 35418171 Vra6g1880 6 35415976 35418171 ECH