Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1868 ATGTCACAGCCTTATGTCTACGAAAGCAGAAGGCCAGTGAGAATAATCCCTACTCTACCAGGGAAGACAATAGTGGTGTCTGGTATACAAAACAAGACAATAGCTGATAGTTTCACCATGCAGAAAATTATGGAAGCACTGCATAATGCAGACAGAGACAAAAATGGCAGTTACAACAAGGATGAACTCAAGCAAGCCCTCAGAGACTTAGGTGCCTACTTCCCTGGTTGGAGAGCCTTTCGTGCTTTCGGAAAAGCTGATGCCAACAATGACGGTCAAATTAGCGGCGAAGAAATCGACACTCTCATTGAGTATCTTCATTCTTGTGGCTTTGGAAAATAG 342 0.4357 MSQPYVYESRRPVRIIPTLPGKTIVVSGIQNKTIADSFTMQKIMEALHNADRDKNGSYNKDELKQALRDLGAYFPGWRAFRAFGKADANNDGQISGEEIDTLIEYLHSCGFGK* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1868 113 Gene3D - 26 108 - -
Vra6g1868 113 SMART efh_1 42 70 IPR002048 GO:0005509
Vra6g1868 113 SMART efh_1 78 106 IPR002048 GO:0005509
Vra6g1868 113 CDD EFh 42 103 IPR002048 GO:0005509
Vra6g1868 113 SUPERFAMILY EF-hand 39 99 IPR011992 -
Vra6g1868 113 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Vra6g1868 113 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Vra6g1868 113 Pfam EF hand 81 102 IPR002048 GO:0005509
Vra6g1868 113 ProSiteProfiles EF-hand calcium-binding domain profile. 81 109 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1868 Vra-Chr6 35331817 35332378 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1868 - K02183 vra:106764438 233.417