Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1789 ATGGCCAATAATTCTCAGCCCTCCAACATGCAGTTTCGGCCAGTCATTCAAGCTCAGCAAGGGCAACAATTTGTTCCTATGAATTCACAACAATTTGGACCTGCAGGACATGCTATTCCTTCTTCAAATGTGGGAATGCCTGTCATTCAAGGTCAACAGTTGCAATATTCTCAACAAATGCAGCAATTGACTCCAAGACCAATGCAGCCTGGTCATCTTGCTCCTTCATCACAACCTATACCCATGCCATATGTTCAGACAAACAGACCAATGTCATCTATTCCACCCCATTCACAAACTGTTCCTCCTTTAAGCAATCATATGCCTGGCTTACCTGTTTCTGGAGCACCTCCTCATTCTTCATATTCTTTCACACCATCATATGGTCAGCAGCATGATAATGCAAATGCATTGGCTCAATACCAGCATCCACCTCAAATGCTTGCTCCTCCTGGTGGTCAACCTTGGCCGTCATCTGCATCTCAGAGTGTTGCACCTTCTACATCTGTTCAGCCGTCTGGGTTGCAATCGTCTGGAGCTACATTGACTGATGCGGTAACTAATGCAACTAACCAGCAATCCTTATCTGATTGGCAAGAGCACACTTCTGCAGATGGGAGAAGATATTACTACAACAAGAGGACAAGGCAATCAAGTTGGGAGAAACCTTTGGAATTGATGTCACCTATTGAGAGAGCTGATGCATCGACAGTTTGGAAAGAATTCACTTCTTCAGATGGAAAAAAGTATTATTACAATAAGGTTACTCAACAATCAACGTGGTCAATACCAGAGGAACTTCAGTTGGCTCGGGAGCAGGCACAAAAAGCTGCAAACCAGGGAATGCAGTCAGAAACAAGTGATACACCCAATGCTGTTGGCTCATCAATTGCAACATCAACAGCAGCTAATGCAGCTAGCTTGAACCCTTCTTTGACATCAAATGGGCCTGCTTCCAGCCCATCTTCTGTCATACCAATTGCATCAACCGATTCTCAGCAGTTGGTTTCTGGATTATTAGGGGCCTCTGTTTCACACTCTACAGTTACCTCAAGCACCACAAGTGTTGAACCAAGCAGTGCGGGAAGTGCTGTGCCTGTAGTAATTGCAGGAAGCTCAGGACTACCTGAGAACTCACCTCAACTATCCAAAATGCCACCCATTGTCGAAAATCAAGCATCTCAAGATTTTGCTTCTGCAAATGGATCTTCTCCTCAAAATATTGAGGAAGCTAAAAAAGCATTGGCTGAGGTTGGGAAAAATAATGTGATTCCATCTGAGGAGAAAACTAATGATGATGAAACCTTGGTATATGCAAATAAGTTGGAAGCAAAAAATGCATTTAAAGCGCTGCTGGAATCTGTGAATGTTCAGTCTGATTGGACCTGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTGAAAACACTTGGTGAGCGAAAACAAGCCTTTAATGAGTATTTGGGCCAAAGGAAGAAGCTGGAGGCTGAAGAGAGACGGATGAAGCAGAAAAGAGCCCGCGAAGAATTCACAAAGATGTTGGAAGAGTGCAAGGAACTTACATCCTCCATGAGATGGAGCAAAGCCATTAGGATGTTTGAAAATGATGAACGATATAATGCTGTTGAAAGACCAAGAGACCGAGAGGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGGAAGGAGAAGGAAAATGCGGCAGAGGAACACAGGCGGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGATTATGTGAAGGTGAATAGTCATTGGCGTAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTGCGACTTGAAAAAATTGATCGCTTGCTAGTTTTTCAGGACTATATTCGAGACTTGGAGAAAGAAGAGGAGGAACAAAGAAGAATACAGAAGGATCGAGTCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTTGAAGAACATGTTGCTACTGGATTTCTTACTGCTAAAACTCAATGGCGAGAATATTGCTTGAAGGTCAGGGATTTACCTCAATATCAAGCTGTTGCATCAAATACACTGGGTTCCACCCCAAAAGATTTGTTTGAGGATGTTGCAGAGGATCTTGAGAAACAGTATCATGAAGACAAGACACTTATAAAAGATACAATTAAGTCAGGCAAGATCATTGTGGTGACTACATCAGTATTTGAGGAGTTTAAGGCTGCTGTGTTGGAAGATGCTGCATGCCAAACAATATCTGACATCAATTTAAAGCTTATATTTGAGGAGTTGTTAGATAGAGCTAAAGAGAAGGAGGAGAAAGAAGTCAAGAAGCGCCAACGCCTTGCTGATGAATTTACTAATCTGTTATATACATTCAAGGATATTACTACTTCCTCAAAATGGGAGGATTGCAAGTCACTTTTTGAGGAGACTCAAGAGTACAGGTCAATTGGGGACGAAAGCTATAGTAGAGAAATTTTTGAGGAATACATCACATACTTAAAGGAAAAAGCTAAAGAGAAGGAACGTAAGCGTGAAGAGGAGAAGTTCAAAAAGGAGAAAGAAAGGGAGGAGAAACGGAAGGAGAAGGAGAAAAAAGAAAAAGATAGAGAACGAGAAAAGGATAAGTCAAAGGAACGCCATAGGAAGGATGAAACAGATAGTGATCAAGACATGGCTGACGTCCATGGTTACAAAGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAACATCGGAAAAGGCATCAGAGCAGTATAGATGACGTGGATTCGGAAAAGGAAGACAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGAATCAGACAATGAGAACCGGCACAGACGACACAAGAGGGAGCACTGGGATGTATCTAGGAAATCTGGGGGTCATGAGGAACTTGAAGACGGAGAGCTCGGCGACGATGTTGAAAACTAA 2994 0.4228 MANNSQPSNMQFRPVIQAQQGQQFVPMNSQQFGPAGHAIPSSNVGMPVIQGQQLQYSQQMQQLTPRPMQPGHLAPSSQPIPMPYVQTNRPMSSIPPHSQTVPPLSNHMPGLPVSGAPPHSSYSFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWPSSASQSVAPSTSVQPSGLQSSGATLTDAVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNAVGSSIATSTAANAASLNPSLTSNGPASSPSSVIPIASTDSQQLVSGLLGASVSHSTVTSSTTSVEPSSAGSAVPVVIAGSSGLPENSPQLSKMPPIVENQASQDFASANGSSPQNIEEAKKALAEVGKNNVIPSEEKTNDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAIRMFENDERYNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFRKLLEEHVATGFLTAKTQWREYCLKVRDLPQYQAVASNTLGSTPKDLFEDVAEDLEKQYHEDKTLIKDTIKSGKIIVVTTSVFEEFKAAVLEDAACQTISDINLKLIFEELLDRAKEKEEKEVKKRQRLADEFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKFKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDQDMADVHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEDKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKREHWDVSRKSGGHEELEDGELGDDVEN* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1789 997 SUPERFAMILY FF domain 433 495 IPR036517 -
Vra6g1789 997 MobiDBLite consensus disorder prediction 272 295 - -
Vra6g1789 997 SUPERFAMILY WW domain 238 271 IPR036020 GO:0005515
Vra6g1789 997 SMART FF_2 576 630 IPR002713 -
Vra6g1789 997 SMART FF_2 508 563 IPR002713 -
Vra6g1789 997 SMART FF_2 650 711 IPR002713 -
Vra6g1789 997 SMART FF_2 783 838 IPR002713 -
Vra6g1789 997 SMART FF_2 441 495 IPR002713 -
Vra6g1789 997 Gene3D FF domain 441 496 IPR036517 -
Vra6g1789 997 Gene3D FF domain 571 640 IPR036517 -
Vra6g1789 997 Gene3D FF domain 641 723 IPR036517 -
Vra6g1789 997 Gene3D FF domain 497 570 IPR036517 -
Vra6g1789 997 ProSiteProfiles FF domain profile. 648 711 IPR002713 -
Vra6g1789 997 SUPERFAMILY WW domain 197 231 IPR036020 GO:0005515
Vra6g1789 997 Gene3D - 235 279 - -
Vra6g1789 997 Gene3D - 191 234 - -
Vra6g1789 997 ProSiteProfiles WW/rsp5/WWP domain profile. 196 225 IPR001202 GO:0005515
Vra6g1789 997 ProSitePatterns WW/rsp5/WWP domain signature. 198 223 IPR001202 GO:0005515
Vra6g1789 997 MobiDBLite consensus disorder prediction 273 295 - -
Vra6g1789 997 Gene3D FF domain 778 851 IPR036517 -
Vra6g1789 997 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 4 992 IPR039726 GO:0045292
Vra6g1789 997 Coils Coil 765 789 - -
Vra6g1789 997 SUPERFAMILY FF domain 643 718 IPR036517 -
Vra6g1789 997 ProSitePatterns WW/rsp5/WWP domain signature. 239 264 IPR001202 GO:0005515
Vra6g1789 997 SUPERFAMILY FF domain 568 637 IPR036517 -
Vra6g1789 997 Coils Coil 839 885 - -
Vra6g1789 997 SUPERFAMILY FF domain 776 845 IPR036517 -
Vra6g1789 997 Coils Coil 557 586 - -
Vra6g1789 997 MobiDBLite consensus disorder prediction 849 912 - -
Vra6g1789 997 SMART ww_5 193 225 IPR001202 GO:0005515
Vra6g1789 997 SMART ww_5 234 266 IPR001202 GO:0005515
Vra6g1789 997 Coils Coil 624 644 - -
Vra6g1789 997 Pfam FF domain 510 560 IPR002713 -
Vra6g1789 997 Pfam FF domain 579 627 IPR002713 -
Vra6g1789 997 Pfam FF domain 443 492 IPR002713 -
Vra6g1789 997 Pfam FF domain 788 835 IPR002713 -
Vra6g1789 997 Pfam FF domain 652 707 IPR002713 -
Vra6g1789 997 CDD WW 239 266 IPR001202 GO:0005515
Vra6g1789 997 ProSiteProfiles FF domain profile. 576 630 IPR002713 -
Vra6g1789 997 Coils Coil 489 512 - -
Vra6g1789 997 MobiDBLite consensus disorder prediction 919 943 - -
Vra6g1789 997 ProSiteProfiles FF domain profile. 441 495 IPR002713 -
Vra6g1789 997 MobiDBLite consensus disorder prediction 952 986 - -
Vra6g1789 997 MobiDBLite consensus disorder prediction 849 997 - -
Vra6g1789 997 Pfam WW domain 239 264 IPR001202 GO:0005515
Vra6g1789 997 Pfam WW domain 196 223 IPR001202 GO:0005515
Vra6g1789 997 MobiDBLite consensus disorder prediction 95 131 - -
Vra6g1789 997 MobiDBLite consensus disorder prediction 155 179 - -
Vra6g1789 997 SUPERFAMILY FF domain 502 570 IPR036517 -
Vra6g1789 997 MobiDBLite consensus disorder prediction 144 179 - -
Vra6g1789 997 CDD WW 196 225 IPR001202 GO:0005515
Vra6g1789 997 ProSiteProfiles FF domain profile. 508 563 IPR002713 -
Vra6g1789 997 ProSiteProfiles WW/rsp5/WWP domain profile. 233 266 IPR001202 GO:0005515
Vra6g1789 997 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 4 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1789 Vra-Chr6 34264185 34279166 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1789 K12821 - gmx:100806019 1532.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1789 6 34264185 34279166 Vra6g1789 6 34264185 34279166 ECH