Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1752 ATGGCTCTCATCACTCGAACCGGAACCACGTGCCGCCTCCCTCAGCGGCTAGCTTCAGCGTCTCTCCTCCACAGCAGTTCCTCCGGAACGGTGGCTCCGACGAGTTATTGTGCGCCGGCTCCGCCGGCGAAGTCCTCCCCCGTGGGGTTGTCGAAGCCGGCGGAGTTCGTAATCTCGAAGGTCGACGCGCTCATGAACTGGGCCCGCGTGGGGTCCATCTGGCCCATGACGTTTGGGCTGGCCTGCTGCGCGGTGGAGATGATGCACACGGGCGCGGCCCGTTACGATCTGGACCGGTTCGGAATCATCTTCAGGCCCAGCCCGCGCCAGTCCGATTGCATGATCGTTGCTGGCACCCTCACCAACAAGATGGCCCCAGCTCTTCGCAAGGTTTATGATCAAATGCCAGAACCAAGGTGGGTGATATCAATGGGAAGCTGTGCCAATGGAGGAGGATATTACCACTATTCATACTCAGTTGTGAGAGGATGTGACAGGATTGTTCCTGTTGACATATATATCCCAGGTTGTCCTCCAACTGCAGAGGCTTTACTCTATGGTCTCCTCCAGCTCCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCTGGTGGTGGACAAAGTGA 624 0.5737 MALITRTGTTCRLPQRLASASLLHSSSSGTVAPTSYCAPAPPAKSSPVGLSKPAEFVISKVDALMNWARVGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1752 207 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 48 196 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vra6g1752 207 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 82 191 IPR006137 GO:0051536
Vra6g1752 207 Gene3D - 46 203 - -
Vra6g1752 207 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 163 179 IPR006138 GO:0008137|GO:0048038|GO:0051539
Vra6g1752 207 PANTHER NADH DEHYDROGENASE 7 207 - -
Vra6g1752 207 SUPERFAMILY HydA/Nqo6-like 55 204 - -
Vra6g1752 207 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL 7 207 - -
Vra6g1752 207 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 56 197 IPR006138 GO:0008137|GO:0048038|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1752 Vra-Chr6 33737755 33739017 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1752 K03940 - gmx:100814025 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1752 6 33737755 33739017 Vra6g1752 6 33737755 33739017 ECH
Vra6g1752 6 33737755 33739017 Vra5g1402 5 20751032 20754132 PCT