Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1742 ATGAAAATTATCAACCGAGTATCCGAGTTTAGCAAGGTGACTGAGTTAGTTTTCGACGATTCTCGAAATTTTATCTCGGAAATCGCTACTGAGTTGACTCGTTGTTTCGGTGGCTTGGCCAATTTGAATCAAAACCTCTTCCATTATCGATCACCACCGTCGCTGTCGATGTCGTCTTATTCCGAGAACGACGCCGAGGCTCTCCGGCGCAAGCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCCCCGTCCAAGGTTCCGCTAATCTACTCCGAATCCTATGACATATCATTTCTCGGCATAGAGAAACTGCATCCGTTTGATTCGTCGAAGTGGGGACGCATTTGCCGATTCCTCGTTTCGTTTGGCATTCTCGACAAAGAAAGCATCGTTGAGCCTCTCGAAGCTTCCAAGGATGATCTTCTAGTGGTTCACACAGAATTGTATCTGAATAGCCTGAAGGGGAGTTCAAAAGTTGCTATGATAGTTGAGGTCCCTCCCGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTCCCATTCAAGAAGCAGGTTGGAGGAACTGTACTGGCTGCAAAACTTGCAAAGGAGAGAGGATGGGCCATTAATGTGGGAGGGGGGTTTCATCACTGCTCTGCAGAAAAAGGAGGTGGATTCTGTGTTTATGCAGATATTTCTCTTTGCATCCACTTTGCTTTTGTTCAGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTTGCCTACGATAGCCGAGTCTATATTTTGGATATGTACAATCCTGGAATCTATCCTTTGTACGCATATATTCTGATACAGTGGTCACAATTTTATGACCTTGAGACCAACTTATATCAATTCCTTGCTGCCATCCCTTTATACCTTCTATATCAGGATTACGAGGCGAGAAACTACATAAATCAGCAAGTTGAAGTAAAGAGTGGGACACTTACAGAAGAGTACCTGCAAAAATTAGACGAAGCACTAGAGGTTGCTGGGCGTAGGTTTAACCCTGAGTTGGTAATTTATAATGCTGGAACCGACATCCTACAAGGAGATCCGTTAGGAAGGTTGGAGATCAGCCCCGAAGGAATTGCCCTTAGAGATGAAAAAGTTTTCCGGTTTGCTCGTGAGAAGAACATTCCCATCGTCATGCTCACTTCAGGTGGCTACATGAAATCTAGTGCTAGAGTGATTGCAGATTCAATAATCAATCTTTCTAATAAATGCTTGATAGAAGCGGGTGGAGCTCCAAAGTCTGCGTGA 1311 0.4401 MKIINRVSEFSKVTELVFDDSRNFISEIATELTRCFGGLANLNQNLFHYRSPPSLSMSSYSENDAEALRRKRILSSKLYFDVSPSKVPLIYSESYDISFLGIEKLHPFDSSKWGRICRFLVSFGILDKESIVEPLEASKDDLLVVHTELYLNSLKGSSKVAMIVEVPPVALIPNCLVQQKVLFPFKKQVGGTVLAAKLAKERGWAINVGGGFHHCSAEKGGGFCVYADISLCIHFAFVQLNISRVMIIDLDAHQGNGHEMDFAYDSRVYILDMYNPGIYPLYAYILIQWSQFYDLETNLYQFLAAIPLYLLYQDYEARNYINQQVEVKSGTLTEEYLQKLDEALEVAGRRFNPELVIYNAGTDILQGDPLGRLEISPEGIALRDEKVFRFAREKNIPIVMLTSGGYMKSSARVIADSIINLSNKCLIEAGGAPKSA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1742 436 CDD HDAC_classIV 106 421 IPR044150 GO:0004407|GO:0016575
Vra6g1742 436 Pfam Histone deacetylase domain 106 419 IPR023801 -
Vra6g1742 436 SUPERFAMILY Arginase/deacetylase 84 421 IPR023696 -
Vra6g1742 436 PANTHER HISTONE DEACETYLASE 11 57 431 - -
Vra6g1742 436 Gene3D Histone deacetylase domain 85 429 IPR037138 -
Vra6g1742 436 PANTHER HISTONE DEACETYLASE 11 57 431 - -
Vra6g1742 436 PRINTS Histone deacetylase superfamily signature 210 233 IPR000286 -
Vra6g1742 436 PRINTS Histone deacetylase superfamily signature 244 259 IPR000286 -
Vra6g1742 436 PRINTS Histone deacetylase superfamily signature 353 363 IPR000286 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1742 K11418 - gmx:100781276 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1742 6 33649136 33655154 Vra6g1742 6 33649136 33655154 ECH