Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1741 ATGAGTTCCATTTCTAGTCCAGCCATAGACACAACAACAACAACAAAACACATCATGACCTCGGATTCCCATGGTTTGTCAGATTCAAGGACAATAATGGAACGCCTGTGTGCAGCGTTGATGCCATTGATGCTGGCTGTCGCAGGTTGTTTGGGTTATTGCTCAAACAGCGTTGTGCAGAAGAACAAACGTTGTCCGTACACTGCTGAGGATTTCGCAACCCTTGCTGCTTCAACAAGATTCACAATTAAGGAAGTGGAGGCATTGCATGTGTTGTTTAAAAGGTTAAGCAGCTCTCTAATCGATGATGGTTTTATTCACAAGGAGGAGCTTCAATTGGCATTGTTTCAGACCCCAAATGGAAAATATTTTTTCCTAGATCGAGTTTTTGATGTTTTTGACCAAAAAAGAAATGGTGTAATTGAGTTTGACGAATTTGTCCTTGCTCTCAGTGTTTTCCATCCATATGCCCCCATAGATGAAAAGATTGATTTTGCATTTAAGCTCTATGACCTCAACCAAACTGGATTTATCGGAAGAGATGAAACAATTGCTGATGTGGATAAGGACAGTGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGGATATCACCATTGTGTTTCCAAGTTTTCTTTTCAAATAAAGGAGGCAGAAACTTGA 666 0.3979 MSSISSPAIDTTTTTKHIMTSDSHGLSDSRTIMERLCAALMPLMLAVAGCLGYCSNSVVQKNKRCPYTAEDFATLAASTRFTIKEVEALHVLFKRLSSSLIDDGFIHKEELQLALFQTPNGKYFFLDRVFDVFDQKRNGVIEFDEFVLALSVFHPYAPIDEKIDFAFKLYDLNQTGFIGRDETIADVDKDSDGKISKEDWKAFGYHHCVSKFSFQIKEAET* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1741 221 PRINTS Recoverin family signature 67 81 - -
Vra6g1741 221 PRINTS Recoverin family signature 129 150 - -
Vra6g1741 221 PANTHER CALCINEURIN B 181 207 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vra6g1741 221 PANTHER CALCINEURIN B 23 182 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vra6g1741 221 Pfam EF hand 183 203 IPR002048 GO:0005509
Vra6g1741 221 Pfam EF hand 126 146 IPR002048 GO:0005509
Vra6g1741 221 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Vra6g1741 221 PANTHER CALCINEURIN B-LIKE PROTEIN 10 181 207 - -
Vra6g1741 221 PANTHER CALCINEURIN B-LIKE PROTEIN 10 23 182 - -
Vra6g1741 221 CDD EFh 126 203 IPR002048 GO:0005509
Vra6g1741 221 ProSiteProfiles EF-hand calcium-binding domain profile. 121 156 IPR002048 GO:0005509
Vra6g1741 221 SMART efh_1 125 153 IPR002048 GO:0005509
Vra6g1741 221 SMART efh_1 179 207 IPR002048 GO:0005509
Vra6g1741 221 SUPERFAMILY EF-hand 73 204 IPR011992 -
Vra6g1741 221 Gene3D - 71 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1741 Vra-Chr6 33639049 33642047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1741 27 198 EF-hand Containing Proteins AT4G33000 51.124 1.62e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1741 K06268 - gmx:100810494 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1741 6 33639049 33642047 Vra6g1741 6 33639049 33642047 ECH