Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1728 ATGTCAGCTGGACCTGGACTTGAGTCCCTTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGGAATATAGTGGGAGTCCTGAAGGGCTTTGACCAGGCAACAAACATAATTCTTGATGAGTCCCATGAGCGAGTTTATTCTACAAAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATAAGTGTTGTTGGTGAACTGGACGAAGATCTGGATTCTAATCTGGATTTATCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCACTGA 297 0.4175 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1728 98 SMART Sm3 5 74 IPR001163 -
Vra6g1728 98 SUPERFAMILY Sm-like ribonucleoproteins 5 81 IPR010920 -
Vra6g1728 98 CDD LSm8 5 94 IPR034103 GO:0000398|GO:0005688|GO:0046540
Vra6g1728 98 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8 5 98 - -
Vra6g1728 98 PANTHER LSM1 5 98 IPR044642 -
Vra6g1728 98 Pfam LSM domain 7 73 IPR001163 -
Vra6g1728 98 Gene3D - 6 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1728 Vra-Chr6 33511384 33515957 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1728 K12627 - gmx:100305829 179.489