Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1724 ATGACTTTGAGGCTTTTGATATCGCAGGTTGCAAGACGACAATCCAAATTTGGACAGATTCAAAGTGTATTTGCTACAAGCTATTTTTCTGTCAATAAGTTTGGACATCGTCCTGGGTTTAGACTTTTGGGTGCCCAAGAGAGATTTCAGTCTAGCTACCTTGGCAGTATAGCTCGTCGAGCGCGTGATGCAGATGAAGCTGCCGAAGTTGCTTATCTCAAAGAACTTTACCATCAGAATGATCCTGAGGCTGTGATTAGAGTATTTGAAAGCCAACCATCTTTGCATAATAGTCCCTCGGCTCTTTCCGAATACGTGAAAGCACTGGTGAAAGTTGATAGGCTTGATGAAAGTGAATTACTGAAGACATTAAGGAGAGGCATGTCCAATTCAGTAGCGAGTGAGGAAGAAACTGCAGCTGGACTTTCTGCTTTAAGAAATTTAGGAAAATCAACAAAAGACAATATTATTGGAACTGCTAGTAATCCAATCTATATGGTGGCTAGAGATGGTGGGAATATAAAAGATCAGTTATGGCGTACGCTCAGGATCATTGCGTTGGCCTTTTTTGTAATTTCTGGTCTAGGAGCACTCATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCAACCCATCATGGAAACAAGCACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGCTGAGCTGGAAGAAATTGTTCATTATCTTCGAGATCCTAAGCGGTTTACTCGTCTTGGTGGTAAGCTTCCAAAAGGGATTTTGCTTGTTGGTCCACCTGGTACTGGAAAAACAATGTTGGCTAGAGCTATTGCTGGTGAGGCTGGGGTTCCATTCTTCTCCAGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTGAGAGAACTTTTTGCTGCTGCTAGGAAACGAGCACCTTGTATAATATTCATTGATGAGATTGATGCTGTTGGAGGAAGCCGTAATCCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTATTGGTTGAGCTAGATGGATTCAAGCAAAATGAGGGAATAATTGTGATTGGAGCAACTAATTTTCCAGAATCATTGGATGATGCATTGGTGAGACCTGGGCGGTTTGACCGCAATGTTGCTGTTCCCTATCCGGATGTAAGAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGGTTTTGAAGGCTGACGATGTTGATCTAATGGTCCTTGCTCGAGGAACACCTGGGTGCTCTGGGGCCGATCTTGCAAACGTGGTTAACATGGCTGCTATCAAGGCTGCAATGGATGGTGCCAAAGCTGTGAGAATGGCTGATTTAGAGTTTGCAAAAGACAAGATGCTGATGGGCAGTGAACGCAAGTCAGCTGTTGTATCTGCGGAGGATCGAAAGTGCACTGCTTATCATGAGGGAGGTCATGCCCTTGTTGCCATGTATACTGATGGGGCCGACCCTGTTCACAAAGCAACCATAGTTCCCCGAGGTATGGCTCTTGGCATGGTTATGCAATTGCCCAATGAGGATCAGCTTAGCGTTTCCCGCAAACAGATGCTTGCCAGGCTTGATGTTTGCATGGGAGGCCGGGTTGCCGAAGAACTAATTTTCGGAGAAAATGAAGTCACTGGTGGTGCATCCTCAGATCTCAAGCAAGCAACTAGATTGGCAAGGAGGATGGTTACCAAATATGGCATGGGCAAAGAAGTTGGACTAGTCTCTCACGATTACATAGATAATGGAAGGAGCATGAGCTCAGAGACAAGGCTTCTCATTGAGAAAGAGGTGAAGCAACTTCTGGAGAAGGCTTATAACAATGCAAAAACCATTCTGACGACTCACAGCAAGGAGCATCATGCACTTGCAAATGCTCTTCTGGAGCACGAGACTCTCACGGGAACTCAGATAAAGACATTGCTTGCCGAAGTTAGAGCTCAGATGGAGCAACAGCAGCAGCTACAAACAGTTGAAGCTCAGAGCAGTTCACAATCCAACACGGTGCCTCCATCATCCAGTAACCCGGCATCTGCTGCCGCAGCTGCTGCAGCCGCCGCCGCTGCCACTGCAGCTGCAGCCGCTGCCAGTGCTGCCGCCACAGCCAGTGCTGCCGCTGCCAAGGCTAAAAGTGCTCCAGTGGGATCTTAG 2184 0.457 MTLRLLISQVARRQSKFGQIQSVFATSYFSVNKFGHRPGFRLLGAQERFQSSYLGSIARRARDADEAAEVAYLKELYHQNDPEAVIRVFESQPSLHNSPSALSEYVKALVKVDRLDESELLKTLRRGMSNSVASEEETAAGLSALRNLGKSTKDNIIGTASNPIYMVARDGGNIKDQLWRTLRIIALAFFVISGLGALIEDKGISKGLGINEEVQPIMETSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGILLVGPPGTGKTMLARAIAGEAGVPFFSSSGSEFEEMYVGVGARRVRELFAAARKRAPCIIFIDEIDAVGGSRNPKDQMYMKMTLNQLLVELDGFKQNEGIIVIGATNFPESLDDALVRPGRFDRNVAVPYPDVRGRQQILESHMSKVLKADDVDLMVLARGTPGCSGADLANVVNMAAIKAAMDGAKAVRMADLEFAKDKMLMGSERKSAVVSAEDRKCTAYHEGGHALVAMYTDGADPVHKATIVPRGMALGMVMQLPNEDQLSVSRKQMLARLDVCMGGRVAEELIFGENEVTGGASSDLKQATRLARRMVTKYGMGKEVGLVSHDYIDNGRSMSSETRLLIEKEVKQLLEKAYNNAKTILTTHSKEHHALANALLEHETLTGTQIKTLLAEVRAQMEQQQQLQTVEAQSSSQSNTVPPSSSNPASAAAAAAAAAAATAAAAAASAAATASAAAAKAKSAPVGS* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1724 727 SMART AAA_5 257 393 IPR003593 -
Vra6g1724 727 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 219 653 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra6g1724 727 MobiDBLite consensus disorder prediction 666 691 - -
Vra6g1724 727 Pfam AAA+ lid domain 413 456 IPR041569 -
Vra6g1724 727 PANTHER METALLOPROTEASE M41 FTSH 9 690 - -
Vra6g1724 727 CDD AAA 258 391 - -
Vra6g1724 727 Pfam Peptidase family M41 472 652 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra6g1724 727 Gene3D - 210 391 IPR027417 -
Vra6g1724 727 Pfam ATPase family associated with various cellular activities (AAA) 261 390 IPR003959 GO:0005524|GO:0016887
Vra6g1724 727 Gene3D Peptidase M41 466 665 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra6g1724 727 ProSitePatterns AAA-protein family signature. 361 379 IPR003960 GO:0005524|GO:0016887
Vra6g1724 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 477 IPR027417 -
Vra6g1724 727 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 685 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra6g1724 727 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 9 690 - -
Vra6g1724 727 MobiDBLite consensus disorder prediction 666 690 - -
Vra6g1724 727 Gene3D - 392 465 - -
Vra6g1724 727 SUPERFAMILY FtsH protease domain-like 472 658 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1724 Vra-Chr6 33454760 33465303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1724 61 653 Miscellaneous Gene Families AT5G53170 51.387 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1724 K08955 - gmx:100808349 1106.66