Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1721 ATGTACTACAAAGGAGTTTACCACTTTTTCTATCAATTCAACCCTTATGCACCAACATTTGGGAGGTATATGGTATGGGGTCATTCTGTGTCCTATGATCTCATCAATTGGATTCATCTAAATCATGCTCTTGAACCAAGTGAGTCCTATGACATCAATGGCTGCTATTCTGGCTCAATCACAACCCTCCCTGGGGAAAAACCTATCATTATGTATACAGGGAGTGATTCTAACAAACATCAAGTTCAGAATTTGGCTGTACCAAAGAATCTATCAGACCCCTTCTTAAGGGAATGGGAGAAACACCCTCAAAACCCTATCTTGCTTCCACCCAGTGGAGTTGAAGTGGATGGTTTCAGAGATCCTACAACTGCTTGGCAAGGAAGTGATGGGAAGTGGAGAGTGATCATTGGTGCCAAAAATGGTGATGAAGGGAAGGCTCTTCTCTATTATAGTGAGGATTTTGTTCATTGGAAACTGTTTCCTAATCCTATGTATGCATCAGAAAACACTGGAATGTTTGAGTGTCCAGATTTCTTTCCAGTGTACATCAGTGGCACAAAGAATGGGGTGGATACATCTGTCCACAACAGCAGTGTTAAGCATGTCTTGAAAACCAGCTATCAGAACAAACAACTAGAATACTATTTTCTAGGTGACTATTTCCTTGATCAGGAAAAGTTTGTTGCTGATGCTGATTTGGGAGGACCAAATCTGAACTTAATATTGGACCATGGAATGTTTTATGCTTCCAAGTCATTTTTTGACTATGCAAAAAGCAGAAGGATATTGTGGGGATGGTCAAAGGAGTGTGACACCACACAAGATGATTATGAGAAAGGATGGGCTGGTCTACAGAGTATTCCAAGGCAAGTTTGGCTTGATGAAAGTGGAAACCGGTTAATGCAATGGCCAATTGAAGAGGTAGAAAAGCTACGTGAAAAACAAATTAGCATAAAGGGAGAGAAACTTGTTGGTGGATCAACTCTTGAAGTCTCAGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTGTTTGAGCTTCCAGAAGTAGAGAATGCAGAGTTTCTTGATGAAAGTGAAGTTGATCCTCACTTACTGTGTAGTGAAGAATATGTATCAAGAAGTGGCATAATAGGGCCATTTGGTTTGTTTGCTTTAGCATCTGAGGATCAAACAGAGCACACTGCAATCTTCTTCAGAATATATAAAACCTCCAATAGATATGTATGTTTCATGTGCAGTGATCAAAGCAGGTCTTCATTGCGGGAGAATCTTGATAAATCCTCATATGGAACTATATTTGACATAGACCCTAATCAAAAAACAATTTCTCTCAGAAGTTTGATTGATCGCTCCATTATTGAGAGTTTTGGGGAGAAAGGGAAAATTTGTATTACGAGTAGAGTTTATCCCTCGTTGGCTATTGACAAAGATGTTCATCTTTTTGCTTTCAACAATGGAAGACAGAGTGTGGTGATTTCAGAACTGAATGCTTGGAGCATGAAGCATGCAGAATTTGACCAAGACCAAAGCATAAAATAG 1545 0.3981 MYYKGVYHFFYQFNPYAPTFGRYMVWGHSVSYDLINWIHLNHALEPSESYDINGCYSGSITTLPGEKPIIMYTGSDSNKHQVQNLAVPKNLSDPFLREWEKHPQNPILLPPSGVEVDGFRDPTTAWQGSDGKWRVIIGAKNGDEGKALLYYSEDFVHWKLFPNPMYASENTGMFECPDFFPVYISGTKNGVDTSVHNSSVKHVLKTSYQNKQLEYYFLGDYFLDQEKFVADADLGGPNLNLILDHGMFYASKSFFDYAKSRRILWGWSKECDTTQDDYEKGWAGLQSIPRQVWLDESGNRLMQWPIEEVEKLREKQISIKGEKLVGGSTLEVSGITASQADVEVLFELPEVENAEFLDESEVDPHLLCSEEYVSRSGIIGPFGLFALASEDQTEHTAIFFRIYKTSNRYVCFMCSDQSRSSLRENLDKSSYGTIFDIDPNQKTISLRSLIDRSIIESFGEKGKICITSRVYPSLAIDKDVHLFAFNNGRQSVVISELNAWSMKHAEFDQDQSIK* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1721 514 Gene3D Glycosyl hydrolase domain; family 43 1 317 IPR023296 -
Vra6g1721 514 CDD GH32_Fruct1-like 1 294 - -
Vra6g1721 514 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 305 IPR013148 -
Vra6g1721 514 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 511 - -
Vra6g1721 514 SUPERFAMILY Arabinanase/levansucrase/invertase 1 306 IPR023296 -
Vra6g1721 514 Pfam Glycosyl hydrolases family 32 C terminal 308 501 IPR013189 -
Vra6g1721 514 SUPERFAMILY Concanavalin A-like lectins/glucanases 305 504 IPR013320 -
Vra6g1721 514 SMART glyco_32 1 462 IPR001362 GO:0004553|GO:0005975
Vra6g1721 514 Gene3D - 318 502 - -
Vra6g1721 514 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 1 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1721 Vra-Chr6 33419372 33421715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1721 1 512 Glycoside Hydrolase AT5G11920 54.440 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1721 - K01193 vra:106763740 1060.83