Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1720 ATGGAGATCAATTCAGACAACCTCAATTCTACCATGAACAAGGTACCTCAGAAACAACCTTACAGAACTTGGTACCACTTTCAACCTCCAAAACATTGGATGAATGATCCAAATGCACCAATGTACTACAAAGGAGTTTACCACTTTTTCTACCAGCATAATCCTCATGCAGCAACCTTCGGTGAGAAAATGGTGTGGGCTCACTCTGTGTCCTATGATCTCATCAACTGGATTCATCTGAACCATGCCATTGAGCCAAGTGAACCGTTTGATCTTAACAGTTGTTGGTCAGGGTCAGCCACTATAATCCCAGGAAAAGAACAGCCTGTGATTCTGTACTCAGGAATTGATGACAAAAAGCATCAAGTTCAAAACATAGCTACGCCAAAGAATCTATCAGACCCCTTCTTAAGGGAATGGGTGAAACACCCTCAAAACCCTGTCATGACTCCACCAATTGGGGTTGAAGTTGATAATTTCAGAGACCCTTCAACTGCTTGGCAGGGAAAGGATGGAAAATGGAGGGTAGTCATTGGTGCTCAAAATGGTGATGAAGGGAAGGTAGTTCTCTACCAAAGTGAGGATTTTGCTAATTGGACAGTGGAATTGAATCCTTTTTTTGCATCAGATAATACTGGAGTTTGTGAGTGTCCAGATTTTTTTCCTGTGTCCATCAATAGCACAAATGGGGTGGATACATCTGTCCAAAATCAAAGTGTTAGACATGTGTTGAAGATAAGCTATTATCGGAGAAATCAGGACTATTATTTTCTTGGTAAATATGACAATGGTGATGGAAACTTCATTCCTGATGTTAAATTCATAGGAACTAGTTTGGACTTAAGGTTTGACTATGGTAAATTTTATGCCTCAAAGTCATTTTTTGACCATGCTAAGAGCAGAAGGATACTATGGGCGTGGGTGGACGAGTGTGACACTAGAGATCATGGCATTGAGAAAGGATGGGCTGGTCTTCAGTGTATTCCAAGGCAAGTTTGGCTTGATGAAAGTGGAAACCGGTTAATGCAATGGCCAATCGAAGAGGTAGAAAAGCTACGTGAAAAACAAATTAGCATAAAGGGAGAGAAACTTGTTGGTGGATCAACTCTTGAAGTCTCAGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTGTTTGAGCTTCCAGAAGTAGAGAATGCAGAGTTTCTTGATGAAAGTGAAGTTGATCCTCACTTACTGTGTAGTGAAGAATATGTATCAAGAAGTGGCATAATAGGGCCATTTGGTTTGTTTGCTTTAGCATCTGAGGATCAAACAGAGCACACTGCAATCTTCTTCAGAATATATAAAACCTCCAATAGATATGTATGTTTCATGTGCAGTGATCAAAGCAGGTCTTCATTGCGGGAGAATCTTGATAAATCCTCATATGGAACTATATTTGACATAGACCCTAATCAAAAAACAATTTCTCTCAGAAGTTTGATTGATCGCTCCATTATTGAGAGTTTTGGGGAGAAAGGGAAAATTTGTATTACGAGTAGAGTTTATCCCTCGTTGGCTATTGACAAAGATGTTCATCTTTTTGCTTTCAACAATGGAAGACAGAGTGTGGTGATTTCAGAACTGAATGCTTGGAGCATGAAGCATGCAGAATTTGACCAAGACCAAAGCATATATCAGCAGTAG 1671 0.4016 MEINSDNLNSTMNKVPQKQPYRTWYHFQPPKHWMNDPNAPMYYKGVYHFFYQHNPHAATFGEKMVWAHSVSYDLINWIHLNHAIEPSEPFDLNSCWSGSATIIPGKEQPVILYSGIDDKKHQVQNIATPKNLSDPFLREWVKHPQNPVMTPPIGVEVDNFRDPSTAWQGKDGKWRVVIGAQNGDEGKVVLYQSEDFANWTVELNPFFASDNTGVCECPDFFPVSINSTNGVDTSVQNQSVRHVLKISYYRRNQDYYFLGKYDNGDGNFIPDVKFIGTSLDLRFDYGKFYASKSFFDHAKSRRILWAWVDECDTRDHGIEKGWAGLQCIPRQVWLDESGNRLMQWPIEEVEKLREKQISIKGEKLVGGSTLEVSGITASQADVEVLFELPEVENAEFLDESEVDPHLLCSEEYVSRSGIIGPFGLFALASEDQTEHTAIFFRIYKTSNRYVCFMCSDQSRSSLRENLDKSSYGTIFDIDPNQKTISLRSLIDRSIIESFGEKGKICITSRVYPSLAIDKDVHLFAFNNGRQSVVISELNAWSMKHAEFDQDQSIYQQ* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1720 556 ProSitePatterns Glycosyl hydrolases family 32 active site. 26 39 IPR018053 GO:0004553|GO:0005975
Vra6g1720 556 SMART glyco_32 26 502 IPR001362 GO:0004553|GO:0005975
Vra6g1720 556 Pfam Glycosyl hydrolases family 32 C terminal 348 541 IPR013189 -
Vra6g1720 556 Gene3D Glycosyl hydrolase domain; family 43 31 357 IPR023296 -
Vra6g1720 556 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 14 551 - -
Vra6g1720 556 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 14 551 - -
Vra6g1720 556 CDD GH32_Fruct1-like 32 334 - -
Vra6g1720 556 SUPERFAMILY Arabinanase/levansucrase/invertase 17 346 IPR023296 -
Vra6g1720 556 Pfam Glycosyl hydrolases family 32 N-terminal domain 26 345 IPR013148 -
Vra6g1720 556 Gene3D - 358 542 - -
Vra6g1720 556 SUPERFAMILY Concanavalin A-like lectins/glucanases 345 544 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1720 Vra-Chr6 33404801 33407686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1720 36 550 Glycoside Hydrolase AT1G55120 52.571 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1720 - K01193 gmx:100806220 990.719