Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1719 ATGAAGATCATTGCAGCGCTACTGTTATTTGTTTTAGTTTCTTTTCTTCTCAACAGTGGAAATGGAATTCAAGCATTCACCACACATAGCATCAATTCTGGAGCAACTGCAAAGCAACCTTATCGAACTTCTTATCACTTTCAGCCCCAAGAAAATTGGATGAACGATCCCAATGGGCCTATGTACTACAAAGGTGTTTACCACCTTTTCTATCAGCATAACCCTGAAGCAGCAACCTTTGGTGATAGGATTGTGTGGGGTCACTCAGTATCCTATGATCTCATCAATTGGATTCATCTGAATAATGCCATTGAACCAAGTGGACCATATGATATTAATAGCTGTTGGTCAGGCTCAGCCACTATAATCCCAGGGAAAGAAGAGCCTATGATTTTGTACACGGGAATTGATGATAAGAAGCACCAAGTTCAGAACTTAGCTGTGCCGAGGAATCTATCTGACACCTTCTTAAGGGAATGGGTGAAACACTCTCAGAACCCTGTGATGACTCCACCAAGTGGAGTTGAAGTTGATAATTTCAGAGACCCTTCAACTGCTTGGCAGGGAAAGGATGGGAAATGGAGGGTAGTAGTTGGTGCCCAAAATGGTGATGAAGGGAAGGCAATTCTCTACCAAAGTGAGGATTTTGTTAGTTGGAAAGTGGATCCTAATCCCTTTTATGCATCACAAAATACTGGGGTTTGTGAGTGTCCAGACTTTTTTCCCGTGTACATCAATGGCAGCACAAATGGGGTGGAAACATCTTTGCAAAATCCAAGTGTCAAACATGTCTTGAAGATAAGCTACCTACGCAAGCAGCATGATTACTATTTTCTTGGTAACTATGCATCTGATCAGGGAAACTTCATTCCTGATGTCAGGTTTACAGGGACTAGTTCAGACTTGAGGTATGACTATGGTAAATTCTATGCTTCCAAGTCATTTTTTGAAAATGCCAAAAACAGGAGAATATTGTGGGGATGGGTGAACGAATCTGACTCCACACAAGATGATATTCAGAAAGGATGGGCTGGTCTACAGACAATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGCGATTGGTTCAGTGGCCACTTGAAGAGGTAGAACAACTACGTGGGAAGCACATAAGAATAACGAGGGAGAACCTTGAGCATGGATCAAATCTTGAAGTCTCGGGTATCACTGCATCACAGGCCGATGTAGAAGTGTTGTTTGAGCTACCTGAGCTAGAAAAGGCTGAGTTTCTTGATCCAAATGGAGTTGATCCCCAACTACTTTGTAGCCAAGAATATGCAGCAAGAAGTGGCACAATAGGGCCATTTGGTTTGTTAGCTTTGGCTTCAAAGGATCTCAAAGAGCACACTGCAGTCTTCTTCAGAATTTATAGAGCACCCAATGGATATGTAAGCCTCATGTGCAGTGACCAAAGCAGGTCCTCATTGAGGCATGACCTTGACAAAACTACATATGGAAGTATCTTAGACATAGATCCTAATCTAAAAACGATTTCACTAAGAAGCTTGATTGACCACTCCATTGTTGAGAGTTTTGGAGATGAAGGGAGAGTTTGTATCACTAGCAGAGTTTATCCTTCATTGGCTATAGACAAAGATGCTCATCTTTATGTATTTAACTATGGAAGCCAGAGTGTGGTGGTTTCAGAATTGAACGCTTGGAGCATGAAACAAGCAGAGATTGGGTATGAGGGAAACATAAGCTATACCTGA 1734 0.4193 MKIIAALLLFVLVSFLLNSGNGIQAFTTHSINSGATAKQPYRTSYHFQPQENWMNDPNGPMYYKGVYHLFYQHNPEAATFGDRIVWGHSVSYDLINWIHLNNAIEPSGPYDINSCWSGSATIIPGKEEPMILYTGIDDKKHQVQNLAVPRNLSDTFLREWVKHSQNPVMTPPSGVEVDNFRDPSTAWQGKDGKWRVVVGAQNGDEGKAILYQSEDFVSWKVDPNPFYASQNTGVCECPDFFPVYINGSTNGVETSLQNPSVKHVLKISYLRKQHDYYFLGNYASDQGNFIPDVRFTGTSSDLRYDYGKFYASKSFFENAKNRRILWGWVNESDSTQDDIQKGWAGLQTIPRQVWLDKSGKRLVQWPLEEVEQLRGKHIRITRENLEHGSNLEVSGITASQADVEVLFELPELEKAEFLDPNGVDPQLLCSQEYAARSGTIGPFGLLALASKDLKEHTAVFFRIYRAPNGYVSLMCSDQSRSSLRHDLDKTTYGSILDIDPNLKTISLRSLIDHSIVESFGDEGRVCITSRVYPSLAIDKDAHLYVFNYGSQSVVVSELNAWSMKQAEIGYEGNISYT* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1719 577 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 36 570 - -
Vra6g1719 577 SUPERFAMILY Arabinanase/levansucrase/invertase 37 366 IPR023296 -
Vra6g1719 577 SUPERFAMILY Concanavalin A-like lectins/glucanases 366 565 IPR013320 -
Vra6g1719 577 Pfam Glycosyl hydrolases family 32 C terminal 369 562 IPR013189 -
Vra6g1719 577 Pfam Glycosyl hydrolases family 32 N-terminal domain 46 366 IPR013148 -
Vra6g1719 577 Gene3D - 379 563 - -
Vra6g1719 577 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 36 570 - -
Vra6g1719 577 ProSitePatterns Glycosyl hydrolases family 32 active site. 46 59 IPR018053 GO:0004553|GO:0005975
Vra6g1719 577 CDD GH32_Fruct1-like 52 355 - -
Vra6g1719 577 SMART glyco_32 46 523 IPR001362 GO:0004553|GO:0005975
Vra6g1719 577 Gene3D Glycosyl hydrolase domain; family 43 51 378 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1719 Vra-Chr6 33395689 33398634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1719 61 568 Glycoside Hydrolase AT3G13790 57.640 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1719 K01193 - gmx:100777487 1049.27