Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1704 ATGATAGCTTACTTAGAACACTTCGTGCACGGAAATGACACGGAATCCATGCCTAACGACGACGTTTTGGGCGTCGAAGGTTCGTTCCACTTCGGCGCCACCGCCGCCGGCTGCAAGGACTTCGGCGGGATGAAATCCGCGAAGCCGTTGGCGGTCATACGCCCCGCCGATGCCGCTGACGTAGCGAGGGCGGTGAAGGCCGCAGCGCGCACGGCGAACCTCACGGTGGCGGCGCGCGGCAACGGGCACTCCATCAACGGTCAGGCCATGGCAGAGAATGGGCTGGTCCTCGACATGCGCGCCATGGAGGACCGCTTCACGCTCCTTTCCATCGACGGCTCCCTACACGTCGACGTCTCGGGAGGGGCATTATGGGAAGAGGTCCTGAAACGCTGCGTTTCAGAGTTCCGTCTCGCGCCACGCTCGTGGACGGATTACCTTGGGTTGACCGTCGGCGGCACACTCTCCAACGCTGGCGTCAGCGGCCAGTCCTTCCGTTACGGCCCGCAAACCTCCAACGTAACGGAATTGGAAGTCGTCACCGGAAAAGGCGAAACCTTAGTCTGCTCCGAAACTCAAAATTCAGAACTTTTTTTCGCAACTCTCGGAGGGCTGGGCCAGTTCGGTATCATAACCCGAGCCCGGGTCCCAGTTCAACCAGCCCCCGACATGGTGAGATGGATAAGAGTGGTGTACTCGGAATTTGAAGATTACACTAGAGACGCAGAGTGGCTGGTGACTCTGAGAGAAGGTTACGGTTTTGACTACGTGGAAGGTTTCGTTTTTGTGAACAGTGACGACCCTTGCAACGGCTGGCCCACGGTACCCACGGGCCCAAACCAACGGTTCGACCCGGCTCGCATCCCCTCAACGGCGGGTCCGGTTCTGTATTGTTTAGAACTGGCGCTTCATTACCGTAACGAAGACCACCCTTCCGCTGTTAATATGGAGGTGGATAGATTACTTGGACGACTCCGATTCGTTGAGGGTCTAAAGTTCTCCCTGGATGTGACCTACATGGAATTCCTGCTGCGTGTGAATCGTGTGGAGGAAGATGCAAGAGCCAACGGTATCTGGGACGCACCCCACCCTTGGCTTAACCTGTTCGTCTCCAAGTCCCACATCGCTGAATTCGACCGTGAAGTGTTCAAGAAAATCCTCAAGCACGGTGTTGGTGGCCCCATTCTAGTCTACCCTCTGTTGCGATCCAAGTGGGATACTCGACACTCGGTAGTGCTTCCGGATAGCAACATTTTCTACATTATAGCCTTGCTCCGATTTATTCCACCACCACCAAAGGGACCACCTACTGAACTCTTGCTCCAACAAAACCATGACATTATTCACCTCTGCTGCAACAGAGCCTTTGATTTCAAGCTCTATCTCCCTCACTATCAGTCACAGGAGAACTGGATGCGACACTACGGAGACAAATGGACCAGATTCCTCGAGAGAAAGGCCAATTTTGATCCCTTCGCTCTTCTTGCACCTGGACAGAAAATTTTTTCCCGAATCCCTCAACCCTTGCCCATCACATAA 1539 0.5478 MIAYLEHFVHGNDTESMPNDDVLGVEGSFHFGATAAGCKDFGGMKSAKPLAVIRPADAADVARAVKAAARTANLTVAARGNGHSINGQAMAENGLVLDMRAMEDRFTLLSIDGSLHVDVSGGALWEEVLKRCVSEFRLAPRSWTDYLGLTVGGTLSNAGVSGQSFRYGPQTSNVTELEVVTGKGETLVCSETQNSELFFATLGGLGQFGIITRARVPVQPAPDMVRWIRVVYSEFEDYTRDAEWLVTLREGYGFDYVEGFVFVNSDDPCNGWPTVPTGPNQRFDPARIPSTAGPVLYCLELALHYRNEDHPSAVNMEVDRLLGRLRFVEGLKFSLDVTYMEFLLRVNRVEEDARANGIWDAPHPWLNLFVSKSHIAEFDREVFKKILKHGVGGPILVYPLLRSKWDTRHSVVLPDSNIFYIIALLRFIPPPPKGPPTELLLQQNHDIIHLCCNRAFDFKLYLPHYQSQENWMRHYGDKWTRFLERKANFDPFALLAPGQKIFSRIPQPLPIT* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1704 512 PANTHER GULONOLACTONE OXIDASE 33 507 - -
Vra6g1704 512 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 222 502 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vra6g1704 512 Gene3D - 225 461 IPR016170 -
Vra6g1704 512 SUPERFAMILY FAD-binding/transporter-associated domain-like 34 220 IPR036318 GO:0050660
Vra6g1704 512 ProSiteProfiles PCMH-type FAD-binding domain profile. 45 221 IPR016166 GO:0071949
Vra6g1704 512 Gene3D - 39 503 IPR016167 -
Vra6g1704 512 Pfam FAD binding domain 49 190 IPR006094 GO:0050660
Vra6g1704 512 SUPERFAMILY FAD-linked oxidases, C-terminal domain 222 502 IPR016164 GO:0003824|GO:0050660
Vra6g1704 512 Gene3D - 99 223 IPR016169 -
Vra6g1704 512 PANTHER CYTOKININ DEHYDROGENASE 7 33 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1704 Vra-Chr6 33168916 33173294 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1704 K00279 - gmx:100816566 912.138