Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1702 ATGGGTGAAGCTCCAGTGTTCTACATTAATGGGTTCTCAAAGTTTGAACACGAAATCCAACAACAGAACCATGTGAACGACCAGAACCATGATTCCTCTTGGTACGAGGAAATCATCGATGAAGATCTCAAATGGTCTTTTAAACTCAACAGTGTGCTTCATAAAGCGATTAGTAAATACCAGGATATAACACTCTTAGACACCAAGCGTTTTGGCAAGGCTTTGGTTCTTGATGGGAAGATGCAAAGTGCAGAAACAGACGAGTTTATCTATCACGAATGCTTGATTCACCCTTCTCTTTTGTGTCACCCTAATCCGAAGACTGTGTTTATAATGGGAGGAGGTGAGGGTTCTGCAGCAAGAGAAGCCCTTAAGCACAAGTCAATCGACAGAGTCGTTATGTGCGATATCGATAAGGATGTGGTAGATTTCTGCAAAAAATACTTGATTGCAAATAGGGAAGCATTTTCTAATAAGAAGCTGTACCTTGTGATCAATGATGCGAAGGCTGAATTGGTGAAGAGAAAGGAGAGATTTGATATCATTGTTGGAGATTTAGCAGACCCACTTGAAGATGGACCATGTTACCAACTCTACACCAAATCCTTCTATGAGAACATACTCAAACCAAAGTTAAATGATAATGGCATTTTTGTCACCCAGGCTGGACCAGCAGGTATCTTCACACACAAAGAGGTTTTCACTTCTATATATAACACAATCAAACAGGTCTTCAAATATGTCATTGCATACACAACTCATGTACCATCATTTGCTGACACATGGGGATGGGTCATGGCTTCGGATCAACCACTATCAATTTGTGCTGAAGAAATGGACAGAAGAATTGCAGAAAGAATAGATGGAGAACTTCTCTATCTAAATGGTGCTTGGTTCCATTCATCCACGACAATGAACAAAACTGTTTACCAATCTCTGCAGAATGAAAGTCATGTGTACACAGAAGAAAATGCTAGATTTATTCCAGGGCATGGAGTGGCTTTTCGTCTCTAA 1014 0.4024 MGEAPVFYINGFSKFEHEIQQQNHVNDQNHDSSWYEEIIDEDLKWSFKLNSVLHKAISKYQDITLLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPSLLCHPNPKTVFIMGGGEGSAAREALKHKSIDRVVMCDIDKDVVDFCKKYLIANREAFSNKKLYLVINDAKAELVKRKERFDIIVGDLADPLEDGPCYQLYTKSFYENILKPKLNDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVIAYTTHVPSFADTWGWVMASDQPLSICAEEMDRRIAERIDGELLYLNGAWFHSSTTMNKTVYQSLQNESHVYTEENARFIPGHGVAFRL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1702 337 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 2 336 - -
Vra6g1702 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 32 269 IPR030374 -
Vra6g1702 337 Hamap Polyamine aminopropyltransferase [speE]. 33 314 IPR001045 GO:0003824
Vra6g1702 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 314 IPR029063 -
Vra6g1702 337 Pfam Spermidine synthase tetramerisation domain 34 85 IPR035246 -
Vra6g1702 337 Pfam Spermine/spermidine synthase domain 88 266 - -
Vra6g1702 337 PANTHER BNAA02G04280D PROTEIN 2 336 - -
Vra6g1702 337 CDD AdoMet_MTases 113 221 - -
Vra6g1702 337 Gene3D Vaccinia Virus protein VP39 85 336 IPR029063 -
Vra6g1702 337 Gene3D Spermidine synthase, tetramerisation domain 32 84 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1702 Vra-Chr6 33087210 33090946 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1702 K18787 - gmx:100815510 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1702 6 33087210 33090946 Vra6g1702 6 33087210 33090946 ECH