Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1694 ATGGATTTCAGGGTGATGGGTTTGGAATCTCCACTGTTCCACACGCTGCACCGCATGATGGACATGTCGGACGAGGGTGCAGGGGAAAAGACACACAATGCTCCGACACAGACATACGTGCGAGACGCGAAAGCGATGGCTGCAACAGCTGCGGATGTGAAAGAATATCCGAATTCCTACGTGTTCCTGGTCGACATGCCGGGGTTGAAATCCGGTGACATAAAGGTTCAGGTTGAAGATGATAACGTGCTTTTGATTAGCGGGGAGAGAAAAAGGGAAGAAGAGAAAGAAGGGGTGAAGTATCTGAGAATGGAACGAAGAGTTGGGAAATTCATGCGGAAGTTTGTTTTACCTGAAAATGCAAACAGTGATGCAATCTCTGCTGTGTGTCAAGATGGGGTTCTTAGTGTTACTGTGCAGAAATTGTCTCCTCCTGAACCTAAGAAGCCTAGGACTATTGAAGTGAAGATTGCTTGA 477 0.4717 MDFRVMGLESPLFHTLHRMMDMSDEGAGEKTHNAPTQTYVRDAKAMAATAADVKEYPNSYVFLVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKEGVKYLRMERRVGKFMRKFVLPENANSDAISAVCQDGVLSVTVQKLSPPEPKKPRTIEVKIA* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1694 158 Gene3D - 5 157 IPR008978 -
Vra6g1694 158 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 42 156 IPR002068 -
Vra6g1694 158 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 157 - -
Vra6g1694 158 Pfam Hsp20/alpha crystallin family 52 156 IPR002068 -
Vra6g1694 158 SUPERFAMILY HSP20-like chaperones 33 150 IPR008978 -
Vra6g1694 158 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1694 Vra-Chr6 32992242 32993147 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1694 K13993 - gmx:100813195 259.225