Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1562 ATGCAATTAACCGCGCTCACTGCCACCCTCTCACGCCTCCAACTCCTAGTTCCACTCCCTCCGGACACCACGAAACGACGCGCCGCCGAACAAACCTGCTTGGTGCTCCTCCGCACGTGCAATACGCTCGCCACCCTCACGCGAATCCACGCCCTCATCCTCAAGCTAGGCCTCCACCACAACCCTCTCGTCCTCACCAAGTTCGCTTCCACCGCCTCCAACATCGACGCCGTTCACTACGCCGCCTCCGTCACATTCCCCGACGATCAGAATGACGAAGCTGCCCCTCGCCCTCACGCCTTCCACGACGCTTTTCTTTTCAACACGTTTATCAGAGCCTTTGCCCAAACAAAGCACGCCAAGCCTTGCGCCGTGCGTTTCTACCGCTCCATGCTCCGGCGCGCCGTTTCGCCGAACAAGTTCACCTTCCCGTTCGTCCTCAAGGCCTGCGCCGGCATCGAGAGCTTGGCCCTGGGGATGGCGGTGCACTCCTCGGTGGTGAAGTTTGGCTTCGAAGAGGATATCCACGTGCGGAACGCCATGATCCACATGTATTTCTGCTGTGAGGAAGGGTCTAAACCGAACTCTGCTCAGAAGGTATTCGATGAATGTCCTGACCGCGATTTGGTGACGTGGAGCACCATGATTGGAGGCTACGCACGTGCCGGAAATTCCACTCGTGCAATTTCGTTGTTTAGAGAAATGCAGGTTACAGGGACGTGTCCCGACGAGATCACCATGGTTTTGGTTTTGTCTGCGTGTGCTGATTTGGGTGCGCTTGAGTTGGGGAAGTGGTTGGAGTCTTATGTTGAGAGGAAGAGCATAACGAAGTCTGAGGAGTTATGCAATGCAATGATAGACATGTTTGCGAAGTGTGGTGATGTTGACAGAGCTGTGAAAATTTTCCGGGAAATGGAAACGAGGACCATAGTTTCATGGACTTCAGTGATTGTTGGTTTGGCAATGCACGGTCGCGGATTGGAGGCTGTTTCTCTTTTTGATGAGATGGTGGAACAACAGGTGGAGCCTGATGATGTTGCTTTTGTTGGGGTGCTTTATGCTTGTAGTCACTCAGGACTGGTTGATAAGGGGCATTACTATTTCAAAACCATGGAGAACAGGTTCAACATTGTGCCAAAGATTGAGCATTATGGCTGCATGGTTGATATGTTGAGTAGAGCAGGGCTTGTGAAGGAGGCTGTGGAGTTTGTTGGAGCCATGCCAGTTGAGCCAAACCAGGTCATATGGAGAAGCATAGTCACTGCTTGTAATGCTCGTGGTGAGCTGAGGCTGGGTGAGAACGTGGCCAAGGAGCTAATCAGGAGCGAGCCGATGCACGAGTCTAACTATGTGCTGCTTTCGAACATTTACGCAAAATTGATGCGCTGGGAGAAGAAGAAGAAGGTTAGGGAGATGATGGGTGTGAAGGGGATAAGGAAGATTCCAGGGAGCACCATGATTGAGATGAATAATGAAATATATGAGTTTGTTGCTGGGGATAAGTCACATGATAAATACAAAGAGATATATGAAATGGTGGATGAGATGGGAAAGGAGATTAAGAGAGCAGGGTATGTGCCTACAACATCCCAGGTGTTGCTTGACATTGATGAAGAAGATAAGGAAGATGCTTTGTATAGACACAGTGAAAAACTTGCTATTGCTTTTGCTCTTCTGAGTACAGCCCCTGGAACACCAATTAGAATTGTGAAGAACTTGCGTGTTTGTGAAGATTGCCATTCTGCTACTAAGTTCATTTCTAAGGTTTACAGCCGAGAGATTGTGGTGAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGTTTGTGTTCCTGTGGAGACTTCTGGTAA 1851 0.4997 MQLTALTATLSRLQLLVPLPPDTTKRRAAEQTCLVLLRTCNTLATLTRIHALILKLGLHHNPLVLTKFASTASNIDAVHYAASVTFPDDQNDEAAPRPHAFHDAFLFNTFIRAFAQTKHAKPCAVRFYRSMLRRAVSPNKFTFPFVLKACAGIESLALGMAVHSSVVKFGFEEDIHVRNAMIHMYFCCEEGSKPNSAQKVFDECPDRDLVTWSTMIGGYARAGNSTRAISLFREMQVTGTCPDEITMVLVLSACADLGALELGKWLESYVERKSITKSEELCNAMIDMFAKCGDVDRAVKIFREMETRTIVSWTSVIVGLAMHGRGLEAVSLFDEMVEQQVEPDDVAFVGVLYACSHSGLVDKGHYYFKTMENRFNIVPKIEHYGCMVDMLSRAGLVKEAVEFVGAMPVEPNQVIWRSIVTACNARGELRLGENVAKELIRSEPMHESNYVLLSNIYAKLMRWEKKKKVREMMGVKGIRKIPGSTMIEMNNEIYEFVAGDKSHDKYKEIYEMVDEMGKEIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTAPGTPIRIVKNLRVCEDCHSATKFISKVYSREIVVRDRNRFHHFKNGLCSCGDFW* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1562 616 Pfam E+ motif 493 520 IPR046849 -
Vra6g1562 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 138 IPR002885 -
Vra6g1562 616 Pfam DYW family of nucleic acid deaminases 524 616 IPR032867 GO:0008270
Vra6g1562 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Vra6g1562 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Vra6g1562 616 Pfam PPR repeat family 309 355 IPR002885 -
Vra6g1562 616 Pfam PPR repeat family 208 255 IPR002885 -
Vra6g1562 616 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 602 - -
Vra6g1562 616 PANTHER - 32 602 - -
Vra6g1562 616 Pfam PPR repeat 383 407 IPR002885 -
Vra6g1562 616 Pfam PPR repeat 282 308 IPR002885 -
Vra6g1562 616 Gene3D Tetratricopeptide repeat domain 372 553 IPR011990 GO:0005515
Vra6g1562 616 Gene3D Tetratricopeptide repeat domain 262 371 IPR011990 GO:0005515
Vra6g1562 616 Gene3D Tetratricopeptide repeat domain 154 261 IPR011990 GO:0005515
Vra6g1562 616 Pfam E motif 428 488 IPR046848 -
Vra6g1562 616 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Vra6g1562 616 TIGRFAM PPR: pentatricopeptide repeat domain 281 308 IPR002885 -
Vra6g1562 616 TIGRFAM PPR: pentatricopeptide repeat domain 210 244 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1562 Vra-Chr6 30931797 30935434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1562 102 616 Glycoside Hydrolase AT3G49170 37.308 2.46e-127 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1562 - - gmx:100778415 1005.74