Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1560 ATGGGTGGTAGAGGGATCAAGCTCTTTGATGAAGAAAGGAATGGTCTTTTCTCAATTTCCAATTTTGAGTCTCAATGGGGTGCGCGTGTTAACGACCCTGTAGCTATGTTTGCTAGCGTTAGTCAAGTGGGAATGGGGTTTGGCGTTCAAGAGCCAAACCCTTCTTCTGGTGATTCCCAGCACAATGGGGGCATGAACATTAGGATCCCTTGCACTGAGTTGTACGTTAGGTATGTTCAATCAGAGGGGAAGGTGAAGATTACTGGGGTTCCTGGGGAAGAAGAGGGGGTGGCGGGTGTTAAGGGGAAGAAAAAGGGTGTCTTTAAAGGGTTGAAGATCAAGGTGAAGAACCCTTCTCTTAGGAGGTTGATTAGTGGTGCCTTTGCTGGGGCAGTGTCACGGACCACTGTGGCACCCTTGGAGACCATTAGGACTCATTTGATGGTAGGAAGTAGTGGGAATTCTACTGGGGAGGTCTTCAGCAATATCATGAAGACTGATGGATGGAAGGGCTTGTTTAGGGGTAATTTTGTTAATGTGATTCGGGTTGCACCCAGCAAGGCCATTGAGCTATTTGCATATGATACTGTTAACAAGAACCTCTCACCAAAGCCAGGGGAGCAGCCTAAACTCCCTATTCCTCCATCATTGATAGCAGGTGCTTGTGCTGGAGTTAGTTCAACATTATGCACATATCCTCTGGAGTTGCTAAAGACTCGTTTGACTATCCAGAGGGGTGTGTATGATGGTCTACTAGATGCATTCCTGAAAATAGTGAGAGAAGAGGGTGCTGGAGAACTTTACAGAGGCCTGACACCCAGCCTTATTGGAGTAATACCATATTCTGCAACAAATTACTTTGCATATGACACATTGAGGAAAGCATACAGAAAAATTTTCAAAAAGGAGAAGATTGGCAATGTTGAAACCCTTTTGATAGGATCTGCAGCTGGTGCTATTTCAAGCAGTGCAACATTTCCTCTTGAAGTGGCACGCAAGCACATGCAAGTGGGAGCCCTGAGTGGAAGGCAAATATACAAAAATGTGATTCATGCCCTTGCAAGCATTCTTGAGCAAGAAGGGATGCAAGGATTGTACAAAGGGTTGGGACCTAGCTGCATGAAGTTGGTGCCAGCTGCAGGAATTTCTTTCATGTGCTATGAAGCATGCAAGAGGATACTGGTAGAGGATGATGAAGAGGAGTAG 1206 0.4577 MGGRGIKLFDEERNGLFSISNFESQWGARVNDPVAMFASVSQVGMGFGVQEPNPSSGDSQHNGGMNIRIPCTELYVRYVQSEGKVKITGVPGEEEGVAGVKGKKKGVFKGLKIKVKNPSLRRLISGAFAGAVSRTTVAPLETIRTHLMVGSSGNSTGEVFSNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPIPPSLIAGACAGVSSTLCTYPLELLKTRLTIQRGVYDGLLDAFLKIVREEGAGELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKIFKKEKIGNVETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQIYKNVIHALASILEQEGMQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEDDEEE* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1560 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 295 IPR018108 -
Vra6g1560 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 200 IPR018108 -
Vra6g1560 401 Pfam Mitochondrial carrier protein 118 201 IPR018108 -
Vra6g1560 401 Pfam Mitochondrial carrier protein 305 396 IPR018108 -
Vra6g1560 401 Pfam Mitochondrial carrier protein 211 298 IPR018108 -
Vra6g1560 401 Gene3D Mitochondrial carrier domain 113 399 IPR023395 -
Vra6g1560 401 PRINTS Mitochondrial carrier protein signature 122 135 IPR002067 GO:0055085
Vra6g1560 401 PRINTS Mitochondrial carrier protein signature 135 149 IPR002067 GO:0055085
Vra6g1560 401 PRINTS Mitochondrial carrier protein signature 175 195 IPR002067 GO:0055085
Vra6g1560 401 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Vra6g1560 401 PRINTS Mitochondrial carrier protein signature 268 286 IPR002067 GO:0055085
Vra6g1560 401 PRINTS Mitochondrial carrier protein signature 314 336 IPR002067 GO:0055085
Vra6g1560 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 305 393 IPR018108 -
Vra6g1560 401 PANTHER ADENINE NUCLEOTIDE TRANSPORTER BT1, CHLOROPLASTIC/MITOCHONDRIAL 30 400 - -
Vra6g1560 401 PANTHER SOLUTE CARRIER FAMILY 25 30 400 - -
Vra6g1560 401 SUPERFAMILY Mitochondrial carrier 118 389 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1560 Vra-Chr6 30895897 30899022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1560 1 400 Organic Solute Cotransporters AT4G32400 63.145 1.83e-179 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1560 K14684 - gmx:100816041 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1560 6 30895897 30899022 Vra6g1560 6 30895897 30899022 ECH
Vra6g1560 6 30895897 30899022 Vra5g1194 5 18331640 18335244 PCT