Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1556 ATGGAGAAGATTCACGTCAGCGTCCGTGCAAAGCCTCTGTCTCAAGATGATGCGAAAACAAGTCCCTGGAGAATCTCCGGCAACTCCATCGCCATTTCCAACCTCTCCAAATTTGATTTTGACCAAATATTCTGCGGTAGTTGTGGGACAACGGAAGTCTACGAAGCTCGTACCAAGGATCTCGTGGAGGCCGCAGTTCGGGGATTCAACGGCACTGTCTTCGCTTACGGGCAAACGAACAGTGGGAAGACTTACACGATGCGAGGCTCGAAAGCTGAACCTGGAGTCATTCCTCTCGCTGTTAACGATTTGTTTCAAATCATTCAACAAGACGTGGATCGAGAATTTCTTCTTAGAATGTCATACATGGAGATTTATAATGAAGAGATAAATGATTTGTTGGCCCCTGAACATCGAAAACTGCAGATTCACGAAAATCTAGAGCGTGGGATATATGTTGCGGGGTTGCGAGAAGAAATTGTTGCCTCTCCTCAGCAAGTCCTTAATCTCATGGAGTTTGGAGAATCTCATAGACATATTGGAGAGACAAATATGAATGTGTACAGTAGTAGGTCCCATACTATTTTCCGCATGATAATTGAGAGTAGGGATAGAAGCGAAGATGAAGAAAGTGGCAGCTCTTGTGATGCTGTCCGTGTATCAGTGTTGAACTTAGTGGATCTTGCTGGGTCAGAGCGTGCTGCAAAAACTGGTGCTGAGGGTGTTCGACTCAAAGAAGGCTCTCACATAAACAAAAGCTTAATGACTTTGGGAACTGTAATTAAAAAGTTGAGTGAAGGTGCTGAGAGTCAGGGGGGTCATGTTCCATATCGAGATAGTAAGCTGACTCGAATTTTGCAACCTTCTTTAGGAGGAAATGCTAGAACAGCTATAATATGTAATATCACTCTTGCGCAGATACATACAGATGAAACTAAAAGCAGCCTTCAATTTGCAAGTAGAGCATTGCGTGTCACAAATTGTGCTCAAGTGAATGAGATTTTGACCGATGCTGCTTTATTAAAGCGCCAAAAGAAAGAGATTGAAGATCTTCGTTCCAAATTGATGGGTTCTCATTCAGAGCATTTGGAAAAGGAGATTCTGAGCCTTCGAAATACTTTATTACAGACTGAACTGGAAAGGGAACGCATAGCTTTGGAACTAGAGGAGGAAAAGAAAGCTCAAGCTGAATGGGAGAAAAGAGTAAAGGAACAAGCCAAGAAAATTGAAAATTTGAGTTCAATGGTTCTATTTTCAAATAGGGATGAAAGTCGTGAGCATATTAAAAGGGACAAGAGGCGGGATACATGGTGTATAGGAAAACTTTCACAGGAGCATCCAGGAAATGTATACCCTATCATCCAACCTAGTGCTTCTACGGTTAAACCTGGGAGACCTAATCGAGACATGGGACCACTTCTTCCTTTCGAGGAACTTGTAAATGAAGATGTTTACGTGGATGAGTCCTTTAAGCAAAAGGACAATAATAAAGATGATGCTAACAAGGATTGTAATCTCCCAAACCCATGTGCTTTATTGCATGTAACAAACAGGAAAAAGGCACCACGGAAGAAAAGCTTGCCAATGGAGGACAACAAATTTCTAGAATTGCAAGCAGAATATGAGAGTTTGTTTCTAAAATTTGAAACTGAGAAAACTATAAGTGATATACAGCTTGAGTCATTGAGAAAACAGCTAATTGATTCAAATTCTTTCCATTCTAAGGAATCTGTTGAGTCTGTAAATTATGCAAATAATGGTTGCTTGATTGTTGAGAAAAATGCGAATTTTAGAGAATCAGATGCTATTCTTGTTATCAAGAGACTTCAAGAGCAGATTAAGGTTTTGGAAATGGAAAACTTGTCAAGCCAACAAAGCTTGGATAATGTTGTTGATCTGGTAGCAGAGCAGAATATATGTGGTAGGGAGAAATGCAAAGAGCTCTATGAAGAGCTTATAAATGAACAACAGGCAGCTCGATTGGCTAATGAGAAACTTACTTCCACTGAAACTGTGAGCAACATTAATGATGGAAATTTTGACTTTCCAATCAGTGTTTCCTTGGAAATTGAAGAAATTGCATCGGAAATTCAAAACTCAAAAGATGTTGTTCAAAGTGCTATGTTTATGGTGGATGATGCTATTAAAAGTTTCTCTGCTCTCTGTGATACTCTCCTTGTTTTCAAAACCTCAGTATATGAGGATTATGCAGATCAAATTTTAATCTTGAATAATTCTCAGAATTTGATTTCTTGCCTAAGAAAGAAAATATTTGAGCTTGAAAGTGAGAAGGTTCTTCTAGACAACCAAGTAGCTGATCTACAGAAGCATCTTCAGGAATCAAAATTAGATGCTCAGAAGTCCCAAAATTCTTTGATGGATAACTTAGAACAACAGAAATTTGAAAATGCAGAGTTGATTTCTTATATTCAAACTCTTGGAAAGGATTTATCTTGTTTGACATCGTCTACAGTGGCCAAGGATAGAGAAACTACAAGAAAAGAGCTGGAGAAGGTTAAAACCAAGTTAAAAGAAACTGAGTCTAAACTTAAGATTGCGATACAAGAGAAAACAAAAATTGAGGGTGAGAAAGCCTATGCGGAGCGAGAGATTAAACAATTACGTGGCCAAATATCTCTTCTTGAACGTGATATCAATAAACGTGATTCACTTGCAGGAAGAAGACGTGATTCAATTGTTGAAAGGGGTTCTAAGATATTTGATCCTAAAAGACCAAAAGGCCTAGAACAGACATTGCAGGATGAGCACAAAAAACTGGAAGTTTTGGCATTTGAATCAGAAACAAGAATTGCTTCGTTGGAAGAAGAAATAACAGCTACGTTGAAGGAGAAAGAAGAGGTGATATCTATTAATGAAGGTTTGTTGTTAGAACTGGAAGGCTTGACTGAAAAGCTGAACACATCAACCACTGAACTATATCATTTGAAGGAGGAAATTTATGCTCTCAAGCAAAGATTGGAAGAATCTGATATCAACCAAGAAAATTTGAAAAGCTCTATCAAAGTACTAATGGAAGAAAAGGAAGAGTTGGCTATGCAACTCACTGATTCACTTTTGGAAATAGAGGAGGAAAGGGCAATATGGTCTGCCAAAGAGAAAGCAGTACTTCTAGCTATAGAAGAACACACAAAGTCAAACAATGTGCAAATTACATCATTATCAACAGAATTATTAGAATTATCGAAGGAAAAGGTCCAGGTTGAAGAACTGAGACAGAAACTTTCTTGTATGGAAGTCAAAATGCATGCGGATGGTGTAACAAACAACAAAGAAATGGCTAAGCTCAGAATGAGACTCCGCGGAACACAAGCAAAGCTGGATGCTTTCCGTTGTAGATACAAGGAAGCAATCGATGAATCTATCCTAACAAATAAGAAGTATAAAGACCAGTTGGCTTCAAAATGCATAGAAGTGCTTAACCTAAAGAAAGAGTTAGCAGCAGTCAAAGGGCAATAG 3477 0.3877 MEKIHVSVRAKPLSQDDAKTSPWRISGNSIAISNLSKFDFDQIFCGSCGTTEVYEARTKDLVEAAVRGFNGTVFAYGQTNSGKTYTMRGSKAEPGVIPLAVNDLFQIIQQDVDREFLLRMSYMEIYNEEINDLLAPEHRKLQIHENLERGIYVAGLREEIVASPQQVLNLMEFGESHRHIGETNMNVYSSRSHTIFRMIIESRDRSEDEESGSSCDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAESQGGHVPYRDSKLTRILQPSLGGNARTAIICNITLAQIHTDETKSSLQFASRALRVTNCAQVNEILTDAALLKRQKKEIEDLRSKLMGSHSEHLEKEILSLRNTLLQTELERERIALELEEEKKAQAEWEKRVKEQAKKIENLSSMVLFSNRDESREHIKRDKRRDTWCIGKLSQEHPGNVYPIIQPSASTVKPGRPNRDMGPLLPFEELVNEDVYVDESFKQKDNNKDDANKDCNLPNPCALLHVTNRKKAPRKKSLPMEDNKFLELQAEYESLFLKFETEKTISDIQLESLRKQLIDSNSFHSKESVESVNYANNGCLIVEKNANFRESDAILVIKRLQEQIKVLEMENLSSQQSLDNVVDLVAEQNICGREKCKELYEELINEQQAARLANEKLTSTETVSNINDGNFDFPISVSLEIEEIASEIQNSKDVVQSAMFMVDDAIKSFSALCDTLLVFKTSVYEDYADQILILNNSQNLISCLRKKIFELESEKVLLDNQVADLQKHLQESKLDAQKSQNSLMDNLEQQKFENAELISYIQTLGKDLSCLTSSTVAKDRETTRKELEKVKTKLKETESKLKIAIQEKTKIEGEKAYAEREIKQLRGQISLLERDINKRDSLAGRRRDSIVERGSKIFDPKRPKGLEQTLQDEHKKLEVLAFESETRIASLEEEITATLKEKEEVISINEGLLLELEGLTEKLNTSTTELYHLKEEIYALKQRLEESDINQENLKSSIKVLMEEKEELAMQLTDSLLEIEEERAIWSAKEKAVLLAIEEHTKSNNVQITSLSTELLELSKEKVQVEELRQKLSCMEVKMHADGVTNNKEMAKLRMRLRGTQAKLDAFRCRYKEAIDESILTNKKYKDQLASKCIEVLNLKKELAAVKGQ* 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1556 1158 Coils Coil 1000 1031 - -
Vra6g1556 1158 PANTHER KINESIN-LIKE PROTEIN KIN-7O 1 706 - -
Vra6g1556 1158 Coils Coil 331 415 - -
Vra6g1556 1158 Coils Coil 829 884 - -
Vra6g1556 1158 ProSitePatterns Kinesin motor domain signature. 221 232 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra6g1556 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 356 IPR027417 -
Vra6g1556 1158 Coils Coil 923 943 - -
Vra6g1556 1158 Coils Coil 606 626 - -
Vra6g1556 1158 Coils Coil 743 763 - -
Vra6g1556 1158 CDD KISc_CENP_E 3 325 - -
Vra6g1556 1158 Pfam Kinesin motor domain 33 323 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1556 1158 Coils Coil 1057 1087 - -
Vra6g1556 1158 PRINTS Kinesin heavy chain signature 68 89 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1556 1158 PRINTS Kinesin heavy chain signature 183 200 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1556 1158 PRINTS Kinesin heavy chain signature 222 240 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1556 1158 PRINTS Kinesin heavy chain signature 275 296 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1556 1158 PANTHER CENTROMERE PROTEIN E 1 706 - -
Vra6g1556 1158 Gene3D Kinesin motor domain 1 356 IPR036961 -
Vra6g1556 1158 Coils Coil 645 669 - -
Vra6g1556 1158 SMART kinesin_4 1 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1556 1158 ProSiteProfiles Kinesin motor domain profile. 3 325 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1556 Vra-Chr6 30770184 30788561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1556 2 434 Miscellaneous Gene Families AT5G06670 42.438 1.39e-98 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1556 K11498 - gmx:100813718 1698.72