Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1549 ATGCGACGCACTCCTCCCTCCCTCCATTTCCTCTCCGCAACTGACACCGCCACCGCCGCCAACACTTCAGCAGCCACCGCCGCCTCGATGTCTTCACGCCCATCCCGGGGGCGCGGTAGGGGCTTCTCCAGCCGCCCGTACTCCGGCGGCAGAGGTCACTTCGTCTCCGGCGATGCGCACTTACGCTCTGTCCGTGACGCCAATTTAGGTCTCCGGCGAGGTGAGAGTGGAAGCTTCGCGAACCAAACGCTGCATAATCAGAATCCCCCGTGTAATCCGAGGCCTCATCCGCCGCCGCTTCAGCAAGAGCAGTCTCAGTTCCGTAATCGACCGTATTCCCCGCATTTTCGGCCACATTTCCCGCAGTACCGGCAACATCCTCCACCTGAGCACCGGCCGACGTTTCGTCCGCAGACGCATCTCCGGCAGCGGCCGCCGGATTATCGGGACTGGGAGCCTTCCCTGACGCCTCCTCCTCCTCATTGTGAGCGGTTTAAAGTTCTTTCCTATAATATATTGGCTGACTACCTTGCTTTGGACCACCGGAACAAACTTTATTTTCACATACCTCCATACATCTTGGATTGGCAGTGGAGAAAGAGAAGCATACTTTTTGAGTTGGGGCTGTGGTCAGCTGATATCTTGTGTTTACAGGAGGTTGATAGATTTCATGAGTTGGCAGAGGAGTTGCAGCCTAAGGGATACAGTGGCATCTGGAAGATGCGTACAGGTAATCCAGTTGATGGCTGCGCAATATTTTGGAAAAAATCAAGGTTCAATTTGTTATATGAAGAATGCATTGAGTTTAATAAGCTGGGACTCAGGGACAATGTCGCTCAGCTATGTGTACTAGAGATCATTTATCGAAATGGATCTTTCCCATCCAGCTTGACAGGCTCTAGTAAAGTTGTGGTTTGTAACATTCATGTGCTTTACAATCCTAACAGGGGAGAAATTAAGCTTGGCCAGGTTCGTGTGCTACTTGATAAGGCTAAAGCTGTTTCTAAACTCTGGAATGATGCCCCTATAGTTATATGTGGGGATTTTAATTGTACACCCAAGAGTCCGTTATACAACTTTATATCGGAACAGAAGTTGGATCTATCCGGAATAGATAGGAATAAGGTATCAGGACAAGCTTCTGCAATTCCTGCATCAAAGCCCTATTATGGTCCTAATTCTGGTGAATTATCTGCTACTGGTTCAGTTCCGGCTATATCCACTGAAGGTGTCAAGGAAGTTACTGAACAAAATAATTATGGACTGGACACGACAGACCTGGATATTTCTGTTAAATCTTGTGCACACGTTGAGTGTGGAAAGGAAAATGATTCATATGCAGGGAAAGATACTCAGGAAACTGCTGTTGACCATTCGAAGATCTTTCGTGAAGTTGGTAGCATAGAAGAACAAGATGCTTCTTATAGTAAAGGTGGGCTCCATATTGTTCCTGAAAATGGTGATGTTCATGACATTACACCTGTGACCTCTTCAGCTCCTGAAGCTGTTAACAGTGAAACAACTGGGTTGGGAAGCAATGAACATATACCAGATGCTGTCCCAACTTCAAATGAAGAATTAAGCAACAAATCCAACTTACATGTCCCTGAAGAGAATAAACTGGCGGAGTTTGACTGTTCCCCAACTTCTCTTCAGGAATGTCATCAATCTTTCACAAGGGTGAGGATTGATCTTGAGTCAACAGATCTTGACAATGCAGTAATTTCTCCAACTAAACCATCCAGCCAAACTTCAGCTTCCAATACATTGGAAGTCATTAGTACAGAGTATGGAGATAGCCCATCTCATGAGGAAATTGCTGATGACCAAAATAAAAGCTCATCAACTGCATATCTAGGTGATAAATCACATCAAAACTTTCCAATTGATGAAAAAGAGAAAACATTCTTTGATGAGATAGACAAAACCATCGGTGAAAATATTGGTGATGACAGCAGTTTTGTATCTTCCTTACATAATGCTGAAGGAGTTGCTCTTGACATCAGTTCATCAATGAAATCAGATCTTGATAAGTCCTATCAGTACACGAAATTAAATTCTGCTTCCAATTTGTTGCCTGTAGAAGGCAATGAAGGGGAGGATAAGTTGTCTCCTCGTCAGATTTCTAAATCTATTTGGGAAGAGGAGGCTCCTTATAATCCTGCATTATGGACCCCTAAGGAGATAGAAACTGCAACAGGAAATGAGGATTGCACCTTCTTGGAGCACCCTTTACAGCTTAGGAGCACATACACCGAGGCAATGGATTGTTCAGGGACCAGAGACCCCTACGGAGAACCCCTTGTGACTAGTTATAATAGGCGCTTCTCAGGAACTGTTGACTACATTTGGCGATCTGAAGGTCTTCAAACAATCAGAGTTCTTGCTCCGATGGCTAAACATGCCATGGAATGGACTCCAGGATTCCCAACGAAGAAATGGGGCAGTGATCATATTGCATTGGTGACCGAGCTGGCTTTGATGAAAGATGGTACCGACATCTCCACCAAGGTTTAA 2517 0.4545 MRRTPPSLHFLSATDTATAANTSAATAASMSSRPSRGRGRGFSSRPYSGGRGHFVSGDAHLRSVRDANLGLRRGESGSFANQTLHNQNPPCNPRPHPPPLQQEQSQFRNRPYSPHFRPHFPQYRQHPPPEHRPTFRPQTHLRQRPPDYRDWEPSLTPPPPHCERFKVLSYNILADYLALDHRNKLYFHIPPYILDWQWRKRSILFELGLWSADILCLQEVDRFHELAEELQPKGYSGIWKMRTGNPVDGCAIFWKKSRFNLLYEECIEFNKLGLRDNVAQLCVLEIIYRNGSFPSSLTGSSKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAKAVSKLWNDAPIVICGDFNCTPKSPLYNFISEQKLDLSGIDRNKVSGQASAIPASKPYYGPNSGELSATGSVPAISTEGVKEVTEQNNYGLDTTDLDISVKSCAHVECGKENDSYAGKDTQETAVDHSKIFREVGSIEEQDASYSKGGLHIVPENGDVHDITPVTSSAPEAVNSETTGLGSNEHIPDAVPTSNEELSNKSNLHVPEENKLAEFDCSPTSLQECHQSFTRVRIDLESTDLDNAVISPTKPSSQTSASNTLEVISTEYGDSPSHEEIADDQNKSSSTAYLGDKSHQNFPIDEKEKTFFDEIDKTIGENIGDDSSFVSSLHNAEGVALDISSSMKSDLDKSYQYTKLNSASNLLPVEGNEGEDKLSPRQISKSIWEEEAPYNPALWTPKEIETATGNEDCTFLEHPLQLRSTYTEAMDCSGTRDPYGEPLVTSYNRRFSGTVDYIWRSEGLQTIRVLAPMAKHAMEWTPGFPTKKWGSDHIALVTELALMKDGTDISTKV* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1549 838 MobiDBLite consensus disorder prediction 73 145 - -
Vra6g1549 838 SUPERFAMILY DNase I-like 153 367 IPR036691 -
Vra6g1549 838 MobiDBLite consensus disorder prediction 75 89 - -
Vra6g1549 838 MobiDBLite consensus disorder prediction 124 145 - -
Vra6g1549 838 Gene3D Endonuclease/exonuclease/phosphatase 138 422 IPR036691 -
Vra6g1549 838 Gene3D Endonuclease/exonuclease/phosphatase 673 836 IPR036691 -
Vra6g1549 838 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 39 829 - -
Vra6g1549 838 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 39 829 - -
Vra6g1549 838 MobiDBLite consensus disorder prediction 21 59 - -
Vra6g1549 838 Pfam Endonuclease/Exonuclease/phosphatase family 168 369 IPR005135 GO:0003824
Vra6g1549 838 MobiDBLite consensus disorder prediction 598 625 - -
Vra6g1549 838 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1549 Vra-Chr6 30635483 30648470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1549 193 364 EF-hand Containing Proteins AT5G54130 28.415 6.17e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1549 - - vun:114194208 1442.94