Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1523 ATGGAAGGGATGAAGCTTGAAAGGTGGCTCACAAGTGTTTTGTTCCTCATTGTTGCCACAGTGAGCAATGCATTAGGTGCTTTTGTGGGGGTAAATATTGGCACTGATGTTACTGATCTTCCATCTGCTTCAAATCTGGTTGCTATTCTGAAAGCACATCAAATTACACATGTGCGTCTGTATGATGCCAACGAACACATGCTACAAGCACTTTCAAAAACTGGCATTGAAGTAATTGTTGGTGTCACAGATGAAGAGATACTAGGCATTGGAGAATCTGCATCAGTTGCTGCAGCTTGGATTAGTAAGAATGTGGCTGCATACATGCCATTTACTAACATCACAGCAATATCAGTAGGTAGTGAGGTTCTCACCTTAGTCCCAAAAGTTGCACCTGTTCTTGTTCCTGCCATGAACCATCTGCACAAAGCACTTGTTGCTTCAAACCTTAACTTTAGGGTTAAGATTTCAACGCCACAGTCCATGGATATAATTTCCAGGCCTTTTCCTCCTTCCACGGCCACCTTTGACTCCTCATGGAACTCCACAATCTACCAGCTCCTTCAGTTTTTGCAGAACACAAATTCCTCTTATATGTTAAATGCCTACCCTTATTATGGATACACTAGAGGAGATGGCATTTTCCCTATTGAATATGCTCTATTCAGACCCCTTTCTCCTGTGAAGCAAATTGTTGACCCAAACACACTGTTCCATTACAATAGCATGTTTGAGGCCATGGTGGACGCTACCTATTATGCCATAGAAGCCTTCAATTTCAATAATATACCTATTGTTGTCACAGAAACGGGTTGGCCTAGTTTTGGTGCAGTAAATGAACCAGATGCTACTGAAAAGAATGCTGAGACCTACAATAATAATTTAATTCTGAGAGTACTCAATGGTTCAGGACCCCCTAGTCAGCCAAAGATAGCCCTTAATACCTACCTATATGAGTTATTTAATGAGGACAAGAGAAAAGGGCCTGTATCAGAAAAGAATTGGGGTATTTTTTATGCTAATGGAAGTAGTGTTTATCCCTTCAGTTTTAGTGCTTCCAACCAGAGTAATGGAAATTCTCTAGGATCATTTTGTGTGGCTAAAGATGATTCAGACACTGACAAATTGCAAGCTGGCTTGAGCTGGGCTTGTGGACAAGGCCAAGCTAACTGTGTAGCTATCCAACCAGGAAGACCATGCTACTTCCCCAATAACGTGAAAAGCCATGCTTCTTATGCTTATAATGATTATTATCAAAAAATGCATAATGCTGGTGGCACATGTGACTTTGATGGTACAGCTACAACAACAACTGAGGATCCCAGTTATGGGTCCTGTATATATGCGGGAAGTGCTAACTCGAGCTTTGGTGGAAGAAGTTCATCTTCTGCAGCAATTGGACTTGGACCTGTAAGTCCTGTTGGAGTTGGAGCTGGTTTGAACCTGCAAGTGTCCACCTTTCAGTATTTGATATCGCCTATTAGTGTTCTTTTTGCTTTAATGATGTCATGA 1512 0.4147 MEGMKLERWLTSVLFLIVATVSNALGAFVGVNIGTDVTDLPSASNLVAILKAHQITHVRLYDANEHMLQALSKTGIEVIVGVTDEEILGIGESASVAAAWISKNVAAYMPFTNITAISVGSEVLTLVPKVAPVLVPAMNHLHKALVASNLNFRVKISTPQSMDIISRPFPPSTATFDSSWNSTIYQLLQFLQNTNSSYMLNAYPYYGYTRGDGIFPIEYALFRPLSPVKQIVDPNTLFHYNSMFEAMVDATYYAIEAFNFNNIPIVVTETGWPSFGAVNEPDATEKNAETYNNNLILRVLNGSGPPSQPKIALNTYLYELFNEDKRKGPVSEKNWGIFYANGSSVYPFSFSASNQSNGNSLGSFCVAKDDSDTDKLQAGLSWACGQGQANCVAIQPGRPCYFPNNVKSHASYAYNDYYQKMHNAGGTCDFDGTATTTTEDPSYGSCIYAGSANSSFGGRSSSSAAIGLGPVSPVGVGAGLNLQVSTFQYLISPISVLFALMMS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1523 503 SMART X8_cls 363 448 IPR012946 -
Vra6g1523 503 Gene3D - 359 455 - -
Vra6g1523 503 Gene3D Glycosidases 28 358 - -
Vra6g1523 503 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 5 478 - -
Vra6g1523 503 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Vra6g1523 503 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 5 478 IPR044965 GO:0004553|GO:0005975
Vra6g1523 503 SUPERFAMILY (Trans)glycosidases 29 349 IPR017853 -
Vra6g1523 503 Pfam X8 domain 364 435 IPR012946 -
Vra6g1523 503 Pfam Glycosyl hydrolases family 17 29 349 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1523 Vra-Chr6 30131045 30134128 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1523 4 475 Glycoside Hydrolase AT3G13560 65.684 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1523 K19892 - gmx:100779131 882.478