Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1518 ATGGCTCCTCCCAGAGGTCGTGGTGGTGGCGGTGGAGGTTTCAGGGGTGGTAGGGGTGACAGAGGTAGAGGAAGAGGCGGTGGTGGAAGAGGAGGAGATAGGGGTACGCCATTTAAAGCCAGAGGTGGTGGGAGAGGAGGAGGCAGGGGAGGTGGACGTGGAGGAGGTAGAGGTGGTGGCCGTGGTGGAATGAAGGGAGGGAGTAAGGTCGTTGTTCAACCACATAGACACGGGGGTATTTTTATTGCCAAGGGTAAGGAAGACGCCCTTGTCACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGAGTCACTGTTCAGAATGAAGATGGTTCCAAAGACGAGTACAGAATTTGGAATCCCTTCCGCTCGAAGTTGGCTGCTGCCATCCTTGGTGGAGTTGATAACATATGGATTAAACCCGGTGCCAGAGTCCTTTACTTAGGAGCTGCTTCTGGCACAACTGTTTCTCACGTTTCTGACATTGTTGGCCCAACAGGAGTTGTCTATGCAGTTGAGTTTTCTCATAGAAGTGGACGTGATTTGGTCAATATGGCAAAGAAGCGTACTAATGTTATACCCATTATTGAAGATGCCAGACATCCCGCTAAGTACAGGATGTTAGTTGGTATGGTTGATGTCATATTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTTTGGGGCTCAATGCTTCATATTATCTCAAAGCGGGAGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCAACAGTTCCTGCGGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTGAAGGCTGATCAATTCAAGCCATTCGAGCAAGTCACCCTTGAACCATTTGAGAGGGACCATGCTTGTGTTGTCGGTGGATACAGAGTGCCTAAGAAGAAAAAAGATATTGCTGCGTAG 930 0.4785 MAPPRGRGGGGGGFRGGRGDRGRGRGGGGRGGDRGTPFKARGGGRGGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHGGIFIAKGKEDALVTKNLVPGEAVYNEKRVTVQNEDGSKDEYRIWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRVPKKKKDIAA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1518 309 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 296 IPR029063 -
Vra6g1518 309 ProSitePatterns Fibrillarin signature. 170 184 IPR020813 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 4 306 - -
Vra6g1518 309 MobiDBLite consensus disorder prediction 1 70 - -
Vra6g1518 309 PIRSF Nop17p 39 302 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 Gene3D Phosphorylase Kinase; domain 1 67 122 - -
Vra6g1518 309 Gene3D Vaccinia Virus protein VP39 123 300 IPR029063 -
Vra6g1518 309 Pfam Fibrillarin 72 299 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PRINTS Fibrillarin signature 90 109 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PRINTS Fibrillarin signature 118 137 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PRINTS Fibrillarin signature 145 166 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PRINTS Fibrillarin signature 170 187 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PRINTS Fibrillarin signature 195 224 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PRINTS Fibrillarin signature 225 254 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PRINTS Fibrillarin signature 277 298 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 86 299 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 SMART Fibrillarin_2 72 300 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vra6g1518 309 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 4 306 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1518 K14563 - gmx:100789137 499.975