Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1488 ATGCTTCAAACTCACATTAACATTTTCACACCCTTCACCGCCGCACTCCACTCAAAGCAATTCCGTTCCTTGCGTGTCTGTTCCTCCTCTGCTCCGGTACGCCGTCGTGTTGCAACCACCACAACTCCTGGCGAGGCCAATCTCCGGCGCCTCACTTCGCGCATTGTTCAACTCACCCGCCGGAAACAGCTTCGGCAGATTTTGGATGAGATTGAGGTTGCGAAGAGGCAGTTCGGGAAGCTGAACACGATTGTGATGAACGCGGTGCTGGAGGCCTGTGTCCGTTGCGGTGATATCGATTCAGCGATTAGGGTATTCGTAGAGATGAAAAAGGGCGATGGTTGTGGTGTGGATACTGTCACCTATGCCACACTTTTGAAGGGGTTAGGTGAGGCACGGAGGGTCGACGAGGCTTTTGAAATGCTTGAAACTGTAGAAAATGGCACTGCCATGGGAAGTCCAAACATGTCAGCTCCATTGATATTTGGTCTGCTAAATGCCTTAATCAAAGCAGGAGACTTGCGACGTGCACATGGTCTCCTTGCCCGATATGGTTTTGTGTTTCAAGAAGGTGGCAAATTTTCAGTATCAGTATACAACATACTAATTAAGGGCTACGTAAACTCAGGTTATCCGCACACTGCAATAAACATGCTGAATGAAATTTTACGTCAAGGTATAATGCCAGACAGGCTCACATATAACACACTAATTCTAGCATGCGTTGAGAGTGGAAAGTTGGACACTGCAATGCAATTTTTTGAGGAAATGAAGGGAAGAGCACAGAAATTTGTCAATGATGATATGTTTCCAGATATTGTTACATATACGACATTGCTTAAGGGTTTTGGGATGGCAAAGGATCTTACTTCAGTTCTAAAAATAGTTCTTGAAATGAAATCTCGTTCAGAATTATACATTGATAGAACTGCTTACACTGCTATAGTTGATGCTTTTCTAACATGTGGCTCAGTTAAAGGTGCTCTTTGTGTTTTTGGAGAAATATTGAAGCAGGCTGGTTTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTATCCATGATGCGTGCCTTCGCTTTTCTAGGAGATTATGATCTAGTTAAAATTTTGCATAGACGGATTTGGCCAGATTCATCAGGAAACATATTATTAGTAGCTCAAGAAGAAGCTGATCACCTTCTAATGGAAGCAGCACTGAATGCTGGCCAGATCAATGTTGCCATTAAAACACTTGCTGAGATAATTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGGGGCATGGTAGCTTATCGCATTGAGGCCGTGTTGGGATTCTCAAAGTCTTTGTTCAGTCCCTACTTACTTCCTCAGGTTTTACCTTCTCAACCGATTGAGAACTATATGATACGATTTGATGCGACACGGCCACTACAAGGTACCATAAAGCTGAGGAAGGTAGTTATGCGTTTCTTTGATGAAGCAGTTGTTCCTATTGTGGATGAGTGGGGTAGCTGTATAGGGCTGTTACACCGTGAAGATTGCAAGCAGTTGGATGCCCCACTTTCAACTATGATGAGAAGCCCTCCTCCCAGTGTTACGAGTTCAACATCTGTTGGTCATGTAGTTGATTTAATTTTAGCGAAGCGATACCCTATGGTTGTCATTGTAAATTACACGAACTCATTTGCTACTCCTCCATATAACTCTAGAGCAGTTGGAGTTTTTACACCAGAGCAATTAAGTAGGTTTATCTCACCAGTATCTCGAGTAAAATGGACAGACCTTTGTGAAAGGTAA 1785 0.437 MLQTHINIFTPFTAALHSKQFRSLRVCSSSAPVRRRVATTTTPGEANLRRLTSRIVQLTRRKQLRQILDEIEVAKRQFGKLNTIVMNAVLEACVRCGDIDSAIRVFVEMKKGDGCGVDTVTYATLLKGLGEARRVDEAFEMLETVENGTAMGSPNMSAPLIFGLLNALIKAGDLRRAHGLLARYGFVFQEGGKFSVSVYNILIKGYVNSGYPHTAINMLNEILRQGIMPDRLTYNTLILACVESGKLDTAMQFFEEMKGRAQKFVNDDMFPDIVTYTTLLKGFGMAKDLTSVLKIVLEMKSRSELYIDRTAYTAIVDAFLTCGSVKGALCVFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKILHRRIWPDSSGNILLVAQEEADHLLMEAALNAGQINVAIKTLAEIISRWKGISWTSRGGMVAYRIEAVLGFSKSLFSPYLLPQVLPSQPIENYMIRFDATRPLQGTIKLRKVVMRFFDEAVVPIVDEWGSCIGLLHREDCKQLDAPLSTMMRSPPPSVTSSTSVGHVVDLILAKRYPMVVIVNYTNSFATPPYNSRAVGVFTPEQLSRFISPVSRVKWTDLCER* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1488 594 ProSiteProfiles CBS domain profile. 520 591 IPR000644 -
Vra6g1488 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Vra6g1488 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Vra6g1488 594 PANTHER OS09G0431600 PROTEIN 18 587 IPR044781 -
Vra6g1488 594 TIGRFAM PPR: pentatricopeptide repeat domain 274 303 IPR002885 -
Vra6g1488 594 TIGRFAM PPR: pentatricopeptide repeat domain 198 230 IPR002885 -
Vra6g1488 594 TIGRFAM PPR: pentatricopeptide repeat domain 86 118 IPR002885 -
Vra6g1488 594 TIGRFAM PPR: pentatricopeptide repeat domain 233 258 IPR002885 -
Vra6g1488 594 TIGRFAM PPR: pentatricopeptide repeat domain 120 143 IPR002885 -
Vra6g1488 594 CDD CBS_pair_SF 476 553 - -
Vra6g1488 594 Gene3D Tetratricopeptide repeat domain 155 263 IPR011990 GO:0005515
Vra6g1488 594 Pfam Pentatricopeptide repeat domain 262 301 IPR002885 -
Vra6g1488 594 Gene3D Tetratricopeptide repeat domain 40 149 IPR011990 GO:0005515
Vra6g1488 594 SUPERFAMILY CBS-domain pair 459 578 IPR046342 -
Vra6g1488 594 Pfam PPR repeat family 196 241 IPR002885 -
Vra6g1488 594 Pfam PPR repeat family 82 129 IPR002885 -
Vra6g1488 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Vra6g1488 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 112 IPR002885 -
Vra6g1488 594 Gene3D Tetratricopeptide repeat domain 264 436 IPR011990 GO:0005515
Vra6g1488 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 343 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1488 Vra-Chr6 29575747 29591307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1488 78 366 Miscellaneous Gene Families AT4G11690 26.370 4.60e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1488 - - gmx:100813146 962.985