Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1482 ATGTCATCAAAGACAACCATGTATGAGCCAAAAAACATCCTCATAACTGGAGCTGCTGGTTTCATAGCCTCGCATGTCACTACCAAGCTAATCAACAAGTACCCTAGCTACAAGATTGTAGCTCTTGATAAAGTAGACTACTGCTCCACTGTCAGGAATTTGGGGTCATGTATTTCATCACCAAACTTCAAATTTGTTAGGGGTGATATAGCTACTGCAGATATTGTGAATCATATTTTGATAGAAGAGAAAATAGACACCATTATGCATTTTGCTGCTCAAACTCATGTGGACAATTCATTTGGGAACTCCATGGAATTCACCTACAATAATATCTATGGCACTCATGTGCTTCTTGAAGCTTGCAGGGTCACCAATTATGTCAGAAGGTTCATTCATGTCAGCACAGATGAGGTCTATGGTGAAACAGACTTAGAGGATAATATTGGAAACCATGAGACATCTCAGCTTCTACCCACCAATCCTTACTCTGCAACAAAAGCAGGAGCAGAAATGTTGGTCATGGCCTACCACAGGTCTTATGGTCTTCCAGTTATAACTTCCAGAGGCAATAATGTGTATGGTCCCAACCAATACCCAGAAAAGCTTGTTCCTAAGTTCATCCTTCTTGCCATGAGGGGTGAGAAATTGCCAATCCATGGAGATGGATCAAATGTGAGGAGCTACCTCCACTGTGCAGATGTAGCAGAAGCTTTTGATGTCATACTCCACAGAGGAGAGATTGGCCAAATTTACAACATTGGCACCAAGAAAGAAAGGAGTGTGTTAGATGTTGCAGAGGATATATGCAAACTCTTTAAATTGAATCCTAAAGATGTTATTCAGTTTGTTCAAGATAGGCCTTTCAATGATAAGAGATATTTTCTTGATGATCAAAAGCTGAAACAACTTGGTTGGGAGGAGAGAATTACCTGGGAGGAAGGACTCAAGAGAACAATTGACTGGTACCAAAAGAATCCTGATTGGTGGGGTGATGTTTCCACTGCTTTAAACCCTCATCCACGTTTCTCAGCCATCAATCTCTCCGATGAGGCTCAATGGTCATTTCAATATGGATTCTCTAGGCTTGCAAGGTCATTTACAGACATTCGAGGAAGAAACACTTCAGGATTCAAGTTTTTGATATATGGGAGGACTGGTTGGATTGGGGGTTTGTTGGGAAAGCTGTGTGATGAAGAAGGAATTGATTGGGAATATGGGAGAGGGAGATTGCAAGATAGAAAATCACTTGAGGAGGACATAAGAAGAGTAAAGCCAACCCATGTGTTGAATGCAGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAATCACACAAGGTTGAAACTATAAGGACTAATGTTGTAGGCACTTTAACACTGGCTGATGTTTGCAAGGAACAAAACTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGACAAGGACCACCCTCTAGGATCAGGCATTGGGTTCAAGGAAGAGGACAAACCAAATTTCATAGGCTCCTTCTATTCCAAGACCAAGGCCATGGTGGAGGACCTTCTAAGAAACTATGCAAATGTCTGCACATTGAGAGTTAGAATGCCAATATCCTCAGATCTTAGCAATCCAAGAAACTTCATCACAAAAATTTCTCGTTACAATAAAGTGGTAAACATACCTAACAGCATGACAGTACTAGATGAACTCTTACCCATATCCATTGAAATGGCTAAGAGGAACTTAAGAGGGATTTGGAACTTCACCAACCCAGGGGTGATTAGCCACAATCAGATATTAGAATTGTATAGGGATTACATAGATCCACAGTTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAGGTAATTGTTGCTCCAAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAAAGAGTTCCCAGAATTGTTGTCCATCAGAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1989 0.4037 MSSKTTMYEPKNILITGAAGFIASHVTTKLINKYPSYKIVALDKVDYCSTVRNLGSCISSPNFKFVRGDIATADIVNHILIEEKIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNYVRRFIHVSTDEVYGETDLEDNIGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPVITSRGNNVYGPNQYPEKLVPKFILLAMRGEKLPIHGDGSNVRSYLHCADVAEAFDVILHRGEIGQIYNIGTKKERSVLDVAEDICKLFKLNPKDVIQFVQDRPFNDKRYFLDDQKLKQLGWEERITWEEGLKRTIDWYQKNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGFSRLARSFTDIRGRNTSGFKFLIYGRTGWIGGLLGKLCDEEGIDWEYGRGRLQDRKSLEEDIRRVKPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEQNLYMMNFATGCIFEYDKDHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLRNYANVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNQILELYRDYIDPQFKWENFDLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIRDSIIKFVFEPNKKT* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1482 662 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Vra6g1482 662 Gene3D - 204 326 - -
Vra6g1482 662 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 660 - -
Vra6g1482 662 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 334 IPR036291 -
Vra6g1482 662 Pfam RmlD substrate binding domain 379 549 IPR029903 -
Vra6g1482 662 Gene3D - 13 317 - -
Vra6g1482 662 CDD dTDP_HR_like_SDR_e 379 651 - -
Vra6g1482 662 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 1 660 - -
Vra6g1482 662 Gene3D - 368 662 - -
Vra6g1482 662 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Vra6g1482 662 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 375 654 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1482 Vra-Chr6 29353696 29356345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1482 12 323 Miscellaneous Gene Families AT1G02000 24.551 1.21e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1482 K12450 - gmx:100776241 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1482 6 29353696 29356345 Vra6g1482 6 29353696 29356345 ECH