LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g1481	ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTGACAGAGAGGGATCTTGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATTGACTTTGATGATAGGAGAGATGCTCAGGATGCTATTCGTGAATTAGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAATTCTAGGGGTGGAGGTGGTGGCCGTGGTGGCCGTTCTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCCCGGGAATGTCGCTTACGTGGTGGATCAGGAAGACGCCGAAGCCGCAGCCCACCCCGATTTCGTAGGAGCCCTAGCTATGGACGAAGGAGTTACAGTCCTCGTGGGCGATCTCCTAGACGCCGCAGCTTATCACCTCGTGGACGAAGCTACAGCAGGTCACCTCCCTATCGTGGACGGGAGGAAGTTCCATATGCTAATGGAAATGGCCTTAGGGAACGTCGCAGAAGCAGAAGTTGA	537	0.5102	MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS*	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g1481	178	SUPERFAMILY	RNA-binding domain, RBD	3	84	IPR035979	GO:0003676
	Vra6g1481	178	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Vra6g1481	178	SMART	c2hcfinal6	89	105	IPR001878	GO:0003676\|GO:0008270
	Vra6g1481	178	MobiDBLite	consensus disorder prediction	102	178	-	-
	Vra6g1481	178	Gene3D	-	1	73	IPR012677	-
	Vra6g1481	178	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Vra6g1481	178	ProSiteProfiles	Zinc finger CCHC-type profile.	89	104	IPR001878	GO:0003676\|GO:0008270
	Vra6g1481	178	MobiDBLite	consensus disorder prediction	66	88	-	-
	Vra6g1481	178	Pfam	Zinc knuckle	89	104	IPR001878	GO:0003676\|GO:0008270
	Vra6g1481	178	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	2	170	-	-
	Vra6g1481	178	Gene3D	-	84	142	-	-
	Vra6g1481	178	SUPERFAMILY	Retrovirus zinc finger-like domains	82	105	IPR036875	GO:0003676\|GO:0008270
	Vra6g1481	178	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Vra6g1481	178	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	170	-	-
	Vra6g1481	178	CDD	RRM_SRSF3_like	3	71	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g1481	Vra-Chr6	29339517	29342817	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra6g1481	K12896		-	gmx:100790689	251.906

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra6g1481	6	29339517	29342817	Vra6g1481	6	29339517	29342817	ECH